Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080858
Identifier: 99080858
GI number: 99080858
Start: 1088369
End: 1089136
Strand: Direct
Name: 99080858
Synonym: TM1040_1017
Alternate gene names: NA
Gene position: 1088369-1089136 (Clockwise)
Preceding gene: 99080856
Following gene: 99080862
Centisome position: 34.0
GC content: 62.37
Gene sequence:
>768_bases ATGACTGAGATTCTCCACCGCACCCTGCCATATCATCCGATGACACCGCGCCCGCTGCCCGGTATTGAGCCGCTTGCGCC CGAGGACTGGCTGCGCTTTGACGAGGGGTTTGCCCCCCAGATGCAGGAGCGCACGCGTCTGTTGCGCGATCATGCGGATG CCGTGCTGGCAATGGCCCCCGAGGCGGAGCCTGCCGCACAGGAGCTGCTCGATCATGTGCTTGCAGCGCGCTATGGCGCG GGGCGACAGGTGCAGCGGATCACGCGCCCGGATGGGATTGAGGTGGCACTCAATCGTGCCGCCCCGATGGAGACCCTGGG CCACATCGCGCAGCAGGATTTCTGTATTCTTGAAAAGCCCGAAGGCAGCACCGAGCATATCCTGACAGCCGCGGTTTTGT GTTTTCCCGCCAGTTGGACCCTCTCGGAGAAGGTCATGAAACCACTGCTGGCGATCCACGCTCCGGTGCAGGACTATGAC AGCGGGATTGCACGGCGGGTGCAGCGATTGTTTGACGGTGTGCAGGCAGGTCGGCCGCTCTGGCGCTTTAATGCACTGTG GTATGCGGATCCGAGCCTGCATCAGCCACGTTTGGAACAGGATCCACGCCCAACGTCGACGCCAGAGACCCGCGCCTATC TACGCAGCGAATTGCAGTCTATTTATCGGCTGCCCCAGACCAGAGCGGTGGTGTTCTCGATCCACACGCAGGTGCTTGCC CGCGCGGATGTGCTCAGCCAGTGGGGAGACGAGAAAACCCCGCAATAG
Upstream 100 bases:
>100_bases ATTTTGGCGAATTTGGATGGAAAATGCCGGTACTACCCTCTGAAACTGTCCAGAACTGTACAGTGGTAGACAGATTTGGT CGGGCTGCTATGGCTATGCG
Downstream 100 bases:
>100_bases GCTGATATTGCGGGGCTTATATGTCCATTTTTGCGCGTCAGTTGACAGCGGCGTTCAACAGTACCGTTGATTCAAGGAAC ACCAACACCGCAAGCAGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MTEILHRTLPYHPMTPRPLPGIEPLAPEDWLRFDEGFAPQMQERTRLLRDHADAVLAMAPEAEPAAQELLDHVLAARYGA GRQVQRITRPDGIEVALNRAAPMETLGHIAQQDFCILEKPEGSTEHILTAAVLCFPASWTLSEKVMKPLLAIHAPVQDYD SGIARRVQRLFDGVQAGRPLWRFNALWYADPSLHQPRLEQDPRPTSTPETRAYLRSELQSIYRLPQTRAVVFSIHTQVLA RADVLSQWGDEKTPQ
Sequences:
>Translated_255_residues MTEILHRTLPYHPMTPRPLPGIEPLAPEDWLRFDEGFAPQMQERTRLLRDHADAVLAMAPEAEPAAQELLDHVLAARYGA GRQVQRITRPDGIEVALNRAAPMETLGHIAQQDFCILEKPEGSTEHILTAAVLCFPASWTLSEKVMKPLLAIHAPVQDYD SGIARRVQRLFDGVQAGRPLWRFNALWYADPSLHQPRLEQDPRPTSTPETRAYLRSELQSIYRLPQTRAVVFSIHTQVLA RADVLSQWGDEKTPQ >Mature_254_residues TEILHRTLPYHPMTPRPLPGIEPLAPEDWLRFDEGFAPQMQERTRLLRDHADAVLAMAPEAEPAAQELLDHVLAARYGAG RQVQRITRPDGIEVALNRAAPMETLGHIAQQDFCILEKPEGSTEHILTAAVLCFPASWTLSEKVMKPLLAIHAPVQDYDS GIARRVQRLFDGVQAGRPLWRFNALWYADPSLHQPRLEQDPRPTSTPETRAYLRSELQSIYRLPQTRAVVFSIHTQVLAR ADVLSQWGDEKTPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28855; Mature: 28724
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEILHRTLPYHPMTPRPLPGIEPLAPEDWLRFDEGFAPQMQERTRLLRDHADAVLAMAP CCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC EAEPAAQELLDHVLAARYGAGRQVQRITRPDGIEVALNRAAPMETLGHIAQQDFCILEKP CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECC EGSTEHILTAAVLCFPASWTLSEKVMKPLLAIHAPVQDYDSGIARRVQRLFDGVQAGRPL CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCE WRFNALWYADPSLHQPRLEQDPRPTSTPETRAYLRSELQSIYRLPQTRAVVFSIHTQVLA EHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH RADVLSQWGDEKTPQ HHHHHHHCCCCCCCC >Mature Secondary Structure TEILHRTLPYHPMTPRPLPGIEPLAPEDWLRFDEGFAPQMQERTRLLRDHADAVLAMAP CHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC EAEPAAQELLDHVLAARYGAGRQVQRITRPDGIEVALNRAAPMETLGHIAQQDFCILEKP CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECC EGSTEHILTAAVLCFPASWTLSEKVMKPLLAIHAPVQDYDSGIARRVQRLFDGVQAGRPL CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCE WRFNALWYADPSLHQPRLEQDPRPTSTPETRAYLRSELQSIYRLPQTRAVVFSIHTQVLA EHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH RADVLSQWGDEKTPQ HHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA