Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080862

Identifier: 99080862

GI number: 99080862

Start: 1092602

End: 1093228

Strand: Direct

Name: 99080862

Synonym: TM1040_1021

Alternate gene names: NA

Gene position: 1092602-1093228 (Clockwise)

Preceding gene: 99080858

Following gene: 99080865

Centisome position: 34.13

GC content: 57.58

Gene sequence:

>627_bases
TTGCGCGGGCTCCTGTCGGGCGATGGAACGCACCTTCCTATGGGAGACAGCATAGGGCTTCAAGAGAAGAACTCCGAACT
GGATTGGGGCGATTGTATTGGGGGCTTCAAGCTCTTGTTTAGGGTGAGTGAGCCAGTAAGGTGCCGTAGATTGGGGAGAA
ATTTCATGACTATTAAACCGGCCCAACGTTTTTTATCGATCGCATGCTGCGTGATGCTTGCGGCCTGCGGCGAGGTGCCT
GCGAGCAATCAACTGCAATTCGACAATGATGGGAATGGCCGATTCAGTGGCAGCGCGGGGTCCGACTGGACGTCTCAGGA
AGTCGAAACCCAGCTTTCCGGGCTTGTATGTGGCAATGGCTCGATTGCGGACTTCAACGTCAGTGTCTTGCCCTCGGCGC
CCGATTATAAGGTTTTTTCAGGGCGCTGCGCCGCAGGCGTGGTGACAGATTCGAGCACTATGCAGAACCAGCTTGTGTCG
AGGCCGGCAGGGGCTTCGGGTGTCGTGCCAATTCAGAATAGGCCAGTTCCTAATGCACCTGCCCAGAATGCGACCTCGGC
CCCTGTGCCGGTTCCCACGGCAGGAAACAGGGGCGGCTGGGACGGCTCGACGCCATTCGTGGACTGA

Upstream 100 bases:

>100_bases
TCCACCAGCCAGGGCCGCCCCGCCACCGCAAGTCCCGCAGCAGAATTTGAGGTGCCAAAGTCTATGCCAAGCGTGTTGGG
GGACATAGCAGGGGAGTTCA

Downstream 100 bases:

>100_bases
CCCGGCTTGCACCCTTTGGCCTGGCGCGTCTTGCGGGCGCAACATGTCAGTGAGACGAGGATCGAGCTGAAAACCCCGGC
TGCCAGAGCATAGAAAAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKPAQRFLSIACCVMLAACGEVP
ASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNGSIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVS
RPAGASGVVPIQNRPVPNAPAQNATSAPVPVPTAGNRGGWDGSTPFVD

Sequences:

>Translated_208_residues
MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKPAQRFLSIACCVMLAACGEVP
ASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNGSIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVS
RPAGASGVVPIQNRPVPNAPAQNATSAPVPVPTAGNRGGWDGSTPFVD
>Mature_208_residues
MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKPAQRFLSIACCVMLAACGEVP
ASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNGSIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVS
RPAGASGVVPIQNRPVPNAPAQNATSAPVPVPTAGNRGGWDGSTPFVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21764; Mature: 21764

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEHH
AQRFLSIACCVMLAACGEVPASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNG
HHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEECCCCCCCCCHHHHHHHHHEEEECCC
SIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVSRPAGASGVVPIQNRPVPNAP
CEEEEEEEECCCCCCCEEECCCEEEEEEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCC
AQNATSAPVPVPTAGNRGGWDGSTPFVD
CCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEHH
AQRFLSIACCVMLAACGEVPASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNG
HHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEECCCCCCCCCHHHHHHHHHEEEECCC
SIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVSRPAGASGVVPIQNRPVPNAP
CEEEEEEEECCCCCCCEEECCCEEEEEEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCC
AQNATSAPVPVPTAGNRGGWDGSTPFVD
CCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA