Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080862
Identifier: 99080862
GI number: 99080862
Start: 1092602
End: 1093228
Strand: Direct
Name: 99080862
Synonym: TM1040_1021
Alternate gene names: NA
Gene position: 1092602-1093228 (Clockwise)
Preceding gene: 99080858
Following gene: 99080865
Centisome position: 34.13
GC content: 57.58
Gene sequence:
>627_bases TTGCGCGGGCTCCTGTCGGGCGATGGAACGCACCTTCCTATGGGAGACAGCATAGGGCTTCAAGAGAAGAACTCCGAACT GGATTGGGGCGATTGTATTGGGGGCTTCAAGCTCTTGTTTAGGGTGAGTGAGCCAGTAAGGTGCCGTAGATTGGGGAGAA ATTTCATGACTATTAAACCGGCCCAACGTTTTTTATCGATCGCATGCTGCGTGATGCTTGCGGCCTGCGGCGAGGTGCCT GCGAGCAATCAACTGCAATTCGACAATGATGGGAATGGCCGATTCAGTGGCAGCGCGGGGTCCGACTGGACGTCTCAGGA AGTCGAAACCCAGCTTTCCGGGCTTGTATGTGGCAATGGCTCGATTGCGGACTTCAACGTCAGTGTCTTGCCCTCGGCGC CCGATTATAAGGTTTTTTCAGGGCGCTGCGCCGCAGGCGTGGTGACAGATTCGAGCACTATGCAGAACCAGCTTGTGTCG AGGCCGGCAGGGGCTTCGGGTGTCGTGCCAATTCAGAATAGGCCAGTTCCTAATGCACCTGCCCAGAATGCGACCTCGGC CCCTGTGCCGGTTCCCACGGCAGGAAACAGGGGCGGCTGGGACGGCTCGACGCCATTCGTGGACTGA
Upstream 100 bases:
>100_bases TCCACCAGCCAGGGCCGCCCCGCCACCGCAAGTCCCGCAGCAGAATTTGAGGTGCCAAAGTCTATGCCAAGCGTGTTGGG GGACATAGCAGGGGAGTTCA
Downstream 100 bases:
>100_bases CCCGGCTTGCACCCTTTGGCCTGGCGCGTCTTGCGGGCGCAACATGTCAGTGAGACGAGGATCGAGCTGAAAACCCCGGC TGCCAGAGCATAGAAAAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKPAQRFLSIACCVMLAACGEVP ASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNGSIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVS RPAGASGVVPIQNRPVPNAPAQNATSAPVPVPTAGNRGGWDGSTPFVD
Sequences:
>Translated_208_residues MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKPAQRFLSIACCVMLAACGEVP ASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNGSIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVS RPAGASGVVPIQNRPVPNAPAQNATSAPVPVPTAGNRGGWDGSTPFVD >Mature_208_residues MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKPAQRFLSIACCVMLAACGEVP ASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNGSIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVS RPAGASGVVPIQNRPVPNAPAQNATSAPVPVPTAGNRGGWDGSTPFVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21764; Mature: 21764
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKP CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEHH AQRFLSIACCVMLAACGEVPASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNG HHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEECCCCCCCCCHHHHHHHHHEEEECCC SIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVSRPAGASGVVPIQNRPVPNAP CEEEEEEEECCCCCCCEEECCCEEEEEEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCC AQNATSAPVPVPTAGNRGGWDGSTPFVD CCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRGLLSGDGTHLPMGDSIGLQEKNSELDWGDCIGGFKLLFRVSEPVRCRRLGRNFMTIKP CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEHH AQRFLSIACCVMLAACGEVPASNQLQFDNDGNGRFSGSAGSDWTSQEVETQLSGLVCGNG HHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEECCCCCCCCCHHHHHHHHHEEEECCC SIADFNVSVLPSAPDYKVFSGRCAAGVVTDSSTMQNQLVSRPAGASGVVPIQNRPVPNAP CEEEEEEEECCCCCCCEEECCCEEEEEEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCC AQNATSAPVPVPTAGNRGGWDGSTPFVD CCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA