Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080796

Identifier: 99080796

GI number: 99080796

Start: 1020018

End: 1021610

Strand: Direct

Name: 99080796

Synonym: TM1040_0955

Alternate gene names: NA

Gene position: 1020018-1021610 (Clockwise)

Preceding gene: 99080792

Following gene: 99080797

Centisome position: 31.87

GC content: 63.97

Gene sequence:

>1593_bases
ATGCGACGACTGGTCATTTGCTGTGATGGTACCTGGAACACCCCGGATCAGCACCGGGGCGGCGTGCGCACGCCTACCAA
TGTGGCCAAGCTTCACTCTTTGATTGCCAAAACTGGTAGCGGCGCGGGGGTTGAGATTGCTCAGATCACCTACTACCGGC
GCGGGGTCGGCACCTCCGGGGGGCTGTTTCGTCGTCTGTTGGGAGGCGCCATTGGGCTGAAGCTCGAAGATGACATCATG
AGCGCCTATAAATTCCTCGCCGAGACCTATGAACCCGGCGATGAGATCTTTCTCTTTGGGTTCAGCCGGGGCGCTTACAC
GGTGCGCAGCCTTGCGGGCATGGTCTCTTCGGTTGGACTGGCCGATCTGCGACCGGCGCATCTGTCGCCCTATGTAGAAC
CCTGGGATGTGGTGAAGCGGTTGATGCGCAGCTATGCCGCGCGCAAAGCCCAAGGCGATGCGGGCGGCACCACGTCCCCG
GACACACGCCCCGCTGCCGTGAGGTTCCACTCCGATCGCGCCGAGGTCGGATTTCGCTTTATCGGGGTCTGGGACACGGT
TGGCGCGCTGGGCATCCCGGACGACAAGGGCGTCTTGCGGCTGCTTCTGGGCGATCTGCTGCGGCACGAGTTCAGCAACA
CGACGCTTGGGGCCAATGTGGCCTGCGCCCGCCACGCGCTGGCGATGGACGAGCGGCGCAAGGATTTTACTCCGACCCTT
TGGACACGCTGGGCTGCGGGGCAGGATGTGGAGCAGCGCTGGTTTCCCGGCGTCCACGCCGATGTCGGCGGCAGCTACGA
GGACAGCGGCCTCGGCGACCTGACGCTTGACTGGATGCTGCGCGAAGCACAGGCGCAGGGGTTGGCGCTGCGCGAGATCG
CGCCCGGCCATCTGCGCCCGGATGCCTACGGGCGGCGCCATACATCCTATCTGGGGTGGTTCCGCCTGCGTCCAACCCGC
CCGCGCGCTGTGCCAGAGGTGTCGGCTGCCGGCGCGGAGGTCTTTGACTGGACCAGTCGCACCTGTTTTGACGCCTCGGT
GCTGCAGCGCCAGCGCATGCCACCCCCGGGCGAGACGACCTATTGGCCTACCAATGTGCTGCTGAAAGGGCAGAGCGCGA
CGACCATCGCCGCGGCACGCAAGCGTTGGAACACCACGGGGATCTATCTGGAACGTGGCGGCTGTTACCGGGTCGTGGCG
CGTGGGAGCTGGCAGGACGCGGCAATCGAGGCCACGGCAAATGGCGTACGTCGCGGGCTTTCCCTTGGCAAGATCGGCTA
TGCGCTGGCGGCGCTGCCGGAGGCGTTGCGCCGGATCATTCGCAAACGCAAAGGCTTTGCCACCGCAGACGTGGCGTTTT
CGCGTCGTGTCGAAGCTGCGCCCTGGTTTGCGTTGATTGGGTCGATTGCCAATGGGCAGGTTCATGAGGGCAGCGGCGAT
GAGATTGCCGATCATGAATATCACCGCCTCGGAGAAGAGGCCGCCATGATCGTGCGGCAGAGTGGCTATCTCTATCTTTT
TGCGAATGACGCCTGGCAGATGTACGGCAATAACGCGGGTGTCCTGAAGGTCGAGATCACGCGGCTTTCATGA

Upstream 100 bases:

>100_bases
GCGCGCGCGTGTTAGGCTCGGGGATATTTGAGGCGCGCTCCCCCGTGGCGGGACTGAAGGGCGCGAGTTTGCGGAAAATG
CGTTTTTTGAGGAATGAGTG

Downstream 100 bases:

>100_bases
GGGGGCGGCGCGCGAATGCGCGGAGTTGCGCCCCTTGTGTCTGACCCGAGGGCGTTGTTTAACACATGCAGTACTCAAGG
CTTGCGCTACGTGCGGATGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSGGLFRRLLGGAIGLKLEDDIM
SAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGLADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSP
DTRPAAVRFHSDRAEVGFRFIGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL
WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRPDAYGRRHTSYLGWFRLRPTR
PRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETTYWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVA
RGSWQDAAIEATANGVRRGLSLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD
EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS

Sequences:

>Translated_530_residues
MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSGGLFRRLLGGAIGLKLEDDIM
SAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGLADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSP
DTRPAAVRFHSDRAEVGFRFIGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL
WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRPDAYGRRHTSYLGWFRLRPTR
PRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETTYWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVA
RGSWQDAAIEATANGVRRGLSLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD
EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS
>Mature_530_residues
MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSGGLFRRLLGGAIGLKLEDDIM
SAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGLADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSP
DTRPAAVRFHSDRAEVGFRFIGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL
WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRPDAYGRRHTSYLGWFRLRPTR
PRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETTYWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVA
RGSWQDAAIEATANGVRRGLSLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD
EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS

Specific function: Unknown

COG id: COG3673

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6320812, Length=257, Percent_Identity=31.5175097276265, Blast_Score=98, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58273; Mature: 58273

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSG
CCEEEEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCH
GLFRRLLGGAIGLKLEDDIMSAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGL
HHHHHHHHHHCCCEECHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC
ADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSPDTRPAAVRFHSDRAEVGFRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE
IGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL
EEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRP
HHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCC
DAYGRRHTSYLGWFRLRPTRPRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETT
CCCCCCCCCEEEEEEECCCCCCCCCCHHCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCC
YWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVARGSWQDAAIEATANGVRRGL
CCCCCEEEECCCCHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCC
SLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCC
EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS
CCCCHHHHHHHHHHHHHEEECCEEEEEECCEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSG
CCEEEEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCH
GLFRRLLGGAIGLKLEDDIMSAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGL
HHHHHHHHHHCCCEECHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC
ADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSPDTRPAAVRFHSDRAEVGFRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE
IGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL
EEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRP
HHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCC
DAYGRRHTSYLGWFRLRPTRPRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETT
CCCCCCCCCEEEEEEECCCCCCCCCCHHCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCC
YWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVARGSWQDAAIEATANGVRRGL
CCCCCEEEECCCCHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCC
SLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCC
EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS
CCCCHHHHHHHHHHHHHEEECCEEEEEECCEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA