| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yheS [H]
Identifier: 99080795
GI number: 99080795
Start: 1017923
End: 1019824
Strand: Reverse
Name: yheS [H]
Synonym: TM1040_0954
Alternate gene names: 99080795
Gene position: 1019824-1017923 (Counterclockwise)
Preceding gene: 99080799
Following gene: 99080794
Centisome position: 31.86
GC content: 61.3
Gene sequence:
>1902_bases ATGCCTTTCGACATGAGAGACGCCATGCTCAGGATCGAAAACATCACTTATTCCGTCGAAGGCCGCCCCCTTATGGAGGA GGCCTCTGCCAGCATTCCAACCGGTCACAAGGTTGGCGTTGTCGGACGCAATGGCACCGGCAAGTCCACGCTGTTCCGCC TGATCCGGGGCGAACTGGCGCTGGAAGGCGGAACAATCACCCTGCCCTCCAAGGCGCGGATTGGCGGCGTTGCGCAGGAA GTGCCCTCCTCGGAGGTGTCGCTGATCGACACGGTGCTGGCCGCAGATACCGAACGTGCCGCGCTGATGGCGGAGGCCGA CACCGCAACGGATGGCACCCGGATCGCCGAGATCCAGACCCGTCTGGTGGATATTGATGCATGGTCTGCTGAGGCCCGCG CCGCTTCGATCCTCAAGGGGCTTGGCTTTGACGATCAGGATCAGCTGCGTCCCTGTTCTGACTTTTCGGGCGGCTGGCGC ATGCGGGTGGCCCTTGCAGCGGTCCTGTTTGCGCAGCCCGACCTGCTGCTCCTCGATGAGCCGACGAACTACCTCGATCT CGAAGGTGCGCTCTGGCTTGAAAGCTATATCGCGCGCTATCCGCACACGGTTCTGATCGTCTCCCACGACCGCGGGCTTC TCAATCGCGCGGTGAGCGCCATCCTGCATCTCGAGGATCGCAAGCTCACGCTCTATCAGGGGCCTTACGACACTTTTGCC GAGACCCGCGCCGCCCGCATCGCCGTGGCGCAGTCCGAAGCGCAGAAACAGGAAAACCGCCGCGCGCATCTTCAGAGCTT TGTGGATCGCTTCCGCGCCAAGGCCTCCAAGGCCAAGCAGGCCCAATCGCGCCTGAAAATGATCGAGAAGATGAAGCCGA TCTCGACCCCGCAAGAAGCAGCGCTGCGTGCCTTCAGCTTTCCCGAACCTGAGGAGATGTCGCCGCCGATCATCCAGATC GAAGGCGGGATCACCGGCTACGGTGATGTGGAGATCTTGCGGCGTCTGAACCTGCGGATTGATCAGGACGACCGGATCGC GCTGCTGGGCAAGAACGGTCAGGGCAAATCCACGCTCTCCAAGCTGCTCTCGGACCGGCTGCCTTTGATGGCGGGCAAAA TGGTGCGCTCTTCAAAGCTCAGGATCGGCTATTTTGCGCAGCATCAGGTGGATGAGCTTTATATCAATGAGACCCCGCTG GACCATCTGCGCCGCCTGCGCCCTGACGAGCCGCCCGCAAAATGGCGCGCGCGCCTTGCAGGCTTTGGCCTGGGCGCCCA GCAGGCAGAAGTAGAGGTAAAGCGTCTGTCGGGAGGGCAGAAGGCCCGCCTGAGCCTCCTGCTTGCGACCCTTGATGCGC CGCATATGCTGATCCTCGACGAGCCGACGAACCACCTCGACATCGAAAGCCGCGAAGCATTGGTCGAGGCACTGACCGCC TATAGCGGCGCGGTCATCCTTGTGAGCCATGACATGCATCTTCTGAGCATGGTGGCCGATCGTCTGTGGCTGGTCTCGGA GGGAACCGTCAAACCCTATGACGGCGATCTCGACAGCTATCGCGAGATGCTTCTGGCGCGCGACAAACCCGCCGCCAAGG CCGCAACTGTGGCTGCAAGTGCAGCCGAGAAACGCACTGAGAAACCCAAACGCGCCAGTCGCGATCAGCTCCTTGCGCTG CGCTCGGAAGTGCGAAAATCCGAGGCGCGGGTGGAAAAACTCAGCGAAATGCGCGAAAAACTGGATGCCAAGCTCGCGGA CCCTGCCCTCTATGAAAGTGGCAAACAGGCCGACATCGAAGTTTGGCAGAAAAAGCATGCCGAGTGCATCGAGGCCTTGG AGCGCGCGGAAGCGATCTGGATGGACGCGCTGGAAAAACTGGAGCTAGCAGAAACCTCATGA
Upstream 100 bases:
>100_bases CGCGCGCGGATCGCCAAGGCGGGAATACCCGCCCCATGGCGCGCAAGACATCCGGGCTGACAAAGGACCTGCAAAGATAG GATAGTGATTGACCCTCTCG
Downstream 100 bases:
>100_bases TTGATACCGCGTTTCTGATTACCTCTTTTGTGACGCTATTTGTGATCATCGACCCGATTGGATTGATGCCGGTGTTCCTG GCCCTGACCCAAGGCATGAC
Product: ABC transporter related
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 633; Mature: 632
Protein sequence:
>633_residues MPFDMRDAMLRIENITYSVEGRPLMEEASASIPTGHKVGVVGRNGTGKSTLFRLIRGELALEGGTITLPSKARIGGVAQE VPSSEVSLIDTVLAADTERAALMAEADTATDGTRIAEIQTRLVDIDAWSAEARAASILKGLGFDDQDQLRPCSDFSGGWR MRVALAAVLFAQPDLLLLDEPTNYLDLEGALWLESYIARYPHTVLIVSHDRGLLNRAVSAILHLEDRKLTLYQGPYDTFA ETRAARIAVAQSEAQKQENRRAHLQSFVDRFRAKASKAKQAQSRLKMIEKMKPISTPQEAALRAFSFPEPEEMSPPIIQI EGGITGYGDVEILRRLNLRIDQDDRIALLGKNGQGKSTLSKLLSDRLPLMAGKMVRSSKLRIGYFAQHQVDELYINETPL DHLRRLRPDEPPAKWRARLAGFGLGAQQAEVEVKRLSGGQKARLSLLLATLDAPHMLILDEPTNHLDIESREALVEALTA YSGAVILVSHDMHLLSMVADRLWLVSEGTVKPYDGDLDSYREMLLARDKPAAKAATVAASAAEKRTEKPKRASRDQLLAL RSEVRKSEARVEKLSEMREKLDAKLADPALYESGKQADIEVWQKKHAECIEALERAEAIWMDALEKLELAETS
Sequences:
>Translated_633_residues MPFDMRDAMLRIENITYSVEGRPLMEEASASIPTGHKVGVVGRNGTGKSTLFRLIRGELALEGGTITLPSKARIGGVAQE VPSSEVSLIDTVLAADTERAALMAEADTATDGTRIAEIQTRLVDIDAWSAEARAASILKGLGFDDQDQLRPCSDFSGGWR MRVALAAVLFAQPDLLLLDEPTNYLDLEGALWLESYIARYPHTVLIVSHDRGLLNRAVSAILHLEDRKLTLYQGPYDTFA ETRAARIAVAQSEAQKQENRRAHLQSFVDRFRAKASKAKQAQSRLKMIEKMKPISTPQEAALRAFSFPEPEEMSPPIIQI EGGITGYGDVEILRRLNLRIDQDDRIALLGKNGQGKSTLSKLLSDRLPLMAGKMVRSSKLRIGYFAQHQVDELYINETPL DHLRRLRPDEPPAKWRARLAGFGLGAQQAEVEVKRLSGGQKARLSLLLATLDAPHMLILDEPTNHLDIESREALVEALTA YSGAVILVSHDMHLLSMVADRLWLVSEGTVKPYDGDLDSYREMLLARDKPAAKAATVAASAAEKRTEKPKRASRDQLLAL RSEVRKSEARVEKLSEMREKLDAKLADPALYESGKQADIEVWQKKHAECIEALERAEAIWMDALEKLELAETS >Mature_632_residues PFDMRDAMLRIENITYSVEGRPLMEEASASIPTGHKVGVVGRNGTGKSTLFRLIRGELALEGGTITLPSKARIGGVAQEV PSSEVSLIDTVLAADTERAALMAEADTATDGTRIAEIQTRLVDIDAWSAEARAASILKGLGFDDQDQLRPCSDFSGGWRM RVALAAVLFAQPDLLLLDEPTNYLDLEGALWLESYIARYPHTVLIVSHDRGLLNRAVSAILHLEDRKLTLYQGPYDTFAE TRAARIAVAQSEAQKQENRRAHLQSFVDRFRAKASKAKQAQSRLKMIEKMKPISTPQEAALRAFSFPEPEEMSPPIIQIE GGITGYGDVEILRRLNLRIDQDDRIALLGKNGQGKSTLSKLLSDRLPLMAGKMVRSSKLRIGYFAQHQVDELYINETPLD HLRRLRPDEPPAKWRARLAGFGLGAQQAEVEVKRLSGGQKARLSLLLATLDAPHMLILDEPTNHLDIESREALVEALTAY SGAVILVSHDMHLLSMVADRLWLVSEGTVKPYDGDLDSYREMLLARDKPAAKAATVAASAAEKRTEKPKRASRDQLLALR SEVRKSEARVEKLSEMREKLDAKLADPALYESGKQADIEVWQKKHAECIEALERAEAIWMDALEKLELAETS
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=532, Percent_Identity=40.0375939849624, Blast_Score=384, Evalue=1e-106, Organism=Homo sapiens, GI10947137, Length=530, Percent_Identity=34.9056603773585, Blast_Score=323, Evalue=4e-88, Organism=Homo sapiens, GI27881506, Length=530, Percent_Identity=34.9056603773585, Blast_Score=323, Evalue=4e-88, Organism=Homo sapiens, GI69354671, Length=544, Percent_Identity=36.7647058823529, Blast_Score=300, Evalue=3e-81, Organism=Homo sapiens, GI10947135, Length=544, Percent_Identity=36.7647058823529, Blast_Score=299, Evalue=5e-81, Organism=Homo sapiens, GI105990541, Length=192, Percent_Identity=29.6875, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI21536376, Length=180, Percent_Identity=30.5555555555556, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI1789751, Length=615, Percent_Identity=42.7642276422764, Blast_Score=497, Evalue=1e-142, Organism=Escherichia coli, GI1787041, Length=528, Percent_Identity=34.280303030303, Blast_Score=293, Evalue=2e-80, Organism=Escherichia coli, GI1787182, Length=590, Percent_Identity=28.9830508474576, Blast_Score=210, Evalue=2e-55, Organism=Escherichia coli, GI2367384, Length=558, Percent_Identity=28.494623655914, Blast_Score=186, Evalue=3e-48, Organism=Escherichia coli, GI1788165, Length=203, Percent_Identity=32.0197044334975, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=27.3127753303965, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1788506, Length=273, Percent_Identity=27.1062271062271, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786319, Length=201, Percent_Identity=27.363184079602, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=30.0469483568075, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1787712, Length=192, Percent_Identity=31.7708333333333, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1787758, Length=204, Percent_Identity=29.9019607843137, Blast_Score=63, Evalue=6e-11, Organism=Escherichia coli, GI1787029, Length=209, Percent_Identity=26.3157894736842, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17553372, Length=533, Percent_Identity=39.0243902439024, Blast_Score=364, Evalue=1e-101, Organism=Caenorhabditis elegans, GI17559834, Length=553, Percent_Identity=36.3471971066908, Blast_Score=346, Evalue=2e-95, Organism=Caenorhabditis elegans, GI17555318, Length=527, Percent_Identity=36.0531309297913, Blast_Score=345, Evalue=4e-95, Organism=Caenorhabditis elegans, GI17565586, Length=205, Percent_Identity=28.2926829268293, Blast_Score=73, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17532409, Length=216, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17532411, Length=219, Percent_Identity=27.8538812785388, Blast_Score=69, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6321121, Length=540, Percent_Identity=38.1481481481481, Blast_Score=396, Evalue=1e-111, Organism=Saccharomyces cerevisiae, GI6320874, Length=529, Percent_Identity=32.3251417769376, Blast_Score=304, Evalue=3e-83, Organism=Saccharomyces cerevisiae, GI6325030, Length=399, Percent_Identity=29.3233082706767, Blast_Score=142, Evalue=2e-34, Organism=Saccharomyces cerevisiae, GI6324314, Length=389, Percent_Identity=25.9640102827763, Blast_Score=120, Evalue=5e-28, Organism=Saccharomyces cerevisiae, GI6323278, Length=382, Percent_Identity=25.9162303664921, Blast_Score=114, Evalue=5e-26, Organism=Drosophila melanogaster, GI24666836, Length=530, Percent_Identity=40.7547169811321, Blast_Score=406, Evalue=1e-113, Organism=Drosophila melanogaster, GI24641342, Length=554, Percent_Identity=37.0036101083032, Blast_Score=336, Evalue=3e-92, Organism=Drosophila melanogaster, GI24642252, Length=531, Percent_Identity=35.2165725047081, Blast_Score=335, Evalue=8e-92, Organism=Drosophila melanogaster, GI18859989, Length=531, Percent_Identity=35.2165725047081, Blast_Score=335, Evalue=8e-92, Organism=Drosophila melanogaster, GI28574150, Length=198, Percent_Identity=30.8080808080808, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI116007328, Length=198, Percent_Identity=30.8080808080808, Blast_Score=74, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 70132; Mature: 70001
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFDMRDAMLRIENITYSVEGRPLMEEASASIPTGHKVGVVGRNGTGKSTLFRLIRGELA CCCCHHHHHHHHHCEEEEECCCCCHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHE LEGGTITLPSKARIGGVAQEVPSSEVSLIDTVLAADTERAALMAEADTATDGTRIAEIQT ECCCEEECCCCHHHCCHHHHCCCCHHHHHHHHHHCCCHHHEEEECCCCCCCCCCHHEEHH RLVDIDAWSAEARAASILKGLGFDDQDQLRPCSDFSGGWRMRVALAAVLFAQPDLLLLDE HEEEEECCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC PTNYLDLEGALWLESYIARYPHTVLIVSHDRGLLNRAVSAILHLEDRKLTLYQGPYDTFA CCCEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHH ETRAARIAVAQSEAQKQENRRAHLQSFVDRFRAKASKAKQAQSRLKMIEKMKPISTPQEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ALRAFSFPEPEEMSPPIIQIEGGITGYGDVEILRRLNLRIDQDDRIALLGKNGQGKSTLS HHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCEECCCCCEEEEECCCCCHHHHH KLLSDRLPLMAGKMVRSSKLRIGYFAQHQVDELYINETPLDHLRRLRPDEPPAKWRARLA HHHHHCCCHHHHHHHHCCCCEEEEEHHHCHHHEEECCCCHHHHHHCCCCCCCHHHHHHHH GFGLGAQQAEVEVKRLSGGQKARLSLLLATLDAPHMLILDEPTNHLDIESREALVEALTA HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH YSGAVILVSHDMHLLSMVADRLWLVSEGTVKPYDGDLDSYREMLLARDKPAAKAATVAAS CCCEEEEEECCHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH AAEKRTEKPKRASRDQLLALRSEVRKSEARVEKLSEMREKLDAKLADPALYESGKQADIE HHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHH VWQKKHAECIEALERAEAIWMDALEKLELAETS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PFDMRDAMLRIENITYSVEGRPLMEEASASIPTGHKVGVVGRNGTGKSTLFRLIRGELA CCCHHHHHHHHHCEEEEECCCCCHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHE LEGGTITLPSKARIGGVAQEVPSSEVSLIDTVLAADTERAALMAEADTATDGTRIAEIQT ECCCEEECCCCHHHCCHHHHCCCCHHHHHHHHHHCCCHHHEEEECCCCCCCCCCHHEEHH RLVDIDAWSAEARAASILKGLGFDDQDQLRPCSDFSGGWRMRVALAAVLFAQPDLLLLDE HEEEEECCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC PTNYLDLEGALWLESYIARYPHTVLIVSHDRGLLNRAVSAILHLEDRKLTLYQGPYDTFA CCCEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHH ETRAARIAVAQSEAQKQENRRAHLQSFVDRFRAKASKAKQAQSRLKMIEKMKPISTPQEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ALRAFSFPEPEEMSPPIIQIEGGITGYGDVEILRRLNLRIDQDDRIALLGKNGQGKSTLS HHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCEECCCCCEEEEECCCCCHHHHH KLLSDRLPLMAGKMVRSSKLRIGYFAQHQVDELYINETPLDHLRRLRPDEPPAKWRARLA HHHHHCCCHHHHHHHHCCCCEEEEEHHHCHHHEEECCCCHHHHHHCCCCCCCHHHHHHHH GFGLGAQQAEVEVKRLSGGQKARLSLLLATLDAPHMLILDEPTNHLDIESREALVEALTA HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH YSGAVILVSHDMHLLSMVADRLWLVSEGTVKPYDGDLDSYREMLLARDKPAAKAATVAAS CCCEEEEEECCHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH AAEKRTEKPKRASRDQLLALRSEVRKSEARVEKLSEMREKLDAKLADPALYESGKQADIE HHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHH VWQKKHAECIEALERAEAIWMDALEKLELAETS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]