| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080790
Identifier: 99080790
GI number: 99080790
Start: 1013114
End: 1014253
Strand: Reverse
Name: 99080790
Synonym: TM1040_0949
Alternate gene names: NA
Gene position: 1014253-1013114 (Counterclockwise)
Preceding gene: 99080793
Following gene: 99080789
Centisome position: 31.69
GC content: 60.09
Gene sequence:
>1140_bases GTGTCACGCTACGACAGATATGTGCTGTCGCAATATCTTTTGTTCTTTGGCTTTTTTGCCTTGATTCTGGTGGCCGTGTT CTGGATCAACCGGGCCGTAAGCCTGTTTGACTGGCTCATTGGCGATGGCCAAAGCGTTCTCGCGTTCCTCGAGATCTCTG CGCTGAGCCTGCCGAACCTTGTGCGCATGGTGCTCCCGCTGGCCGCGTTTGCGGCGACGGTCTGGGTCACCAACCGGCTG AACTCTGAGAGCGAATTGACGGTATTGCGCGCAACCGGCTCAAGCCCGTGGCAACTGGCCCGACCGGCCATGGTCTTTGG GCTGTTGAGCGCTGCGATGATGTCAGCCCTGAGCCTGTTTCTCTTGCCGGCCTCGCTTGCGCAAATGCAGTTTCGCGAGG CGGAACTCTCGCGCAGCGTCAGCGCCAAGCTGTTGAATGCCGGGAGTTTCCTCCACCCAAGCGAGGGCATCACGTTTTTC ATCGGCTCGATTGAGCCGGATGGAACGTTGCAGAATGTATTCCTTACAGATCAGCGCGACCCCTCTGTGGAAATCACATA CACCAGTGATCGCGCCTATCTGGTGCGTGAAGACGACGAAGCCCACCTGATCCTCGTGGACGGGCTCGCGCAGCGCAAAG AGGCCCATAACGATCGTCTTTCGACCACGGCGTTCTCGGATTTTTCATACCCGCTTGGGGATCTTTCGCCCGCACGCGCT GCAGGCGCGCGCCCGCTGCGCAATATTCCCACGCTTGATCTGCTGCGCGAACGCGCAAGCATCACCGAAGAGGAAGGCCA TAGCGCCGGGGCTCAGGCCGAAGAGTTGCACCTGCGTTTTGCGCGGGCGGCGGTGACCTTTGCGGTGGTGATGATCGGGG TCTCGACCCTGTTGATGGGGGGCTTCAGTCGCTTTGGGATCTGGAAACAGGTGCTTGGGGCCTTTGTGCTATTGATCCTG ATCGAAGGCATGCGGGGGGTCGTCGCCGACCCGGTACGGGAAAATGCGGCGATGTGGCCGCTCATCTACCTGCCTGCGAC GTTGGGCGTGATGATTTCGGTTCTGTTTCTGCATCTGGCGACGCGGCCGCAGGCCCTGATGCGGCTCACGAGGCGCAAGA CGCAGGAGACAGACGCATGA
Upstream 100 bases:
>100_bases CCCATCCGACATCTGGCGCGGAAGATTGCAGTTTTCCCCTTCGCACAATTCCTCTAAGGTCCGGCGAACAATTCGATCGC AAGATCTATGGGGGGATCGA
Downstream 100 bases:
>100_bases TCCTTGATCTCTATTATGCCCGCCGCTTCTTGCAATGGTTCATGGTGATCGCCGCCGTCCTCATGAGTCTGGTGATGCTG ATCGACCTCAGCGAACAATT
Product: permease YjgP/YjgQ
Products: NA
Alternate protein names: Permease YjgP/YjgQ; Permease; Permease YjgP/YjgQ Family; Permease Protein; Transporter YjgP/YjgQ; Permease Yjgp/Yjgq Family Protein; YjgP/YjgQ Permease; Permease YjgP
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNLVRMVLPLAAFAATVWVTNRL NSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLFLLPASLAQMQFREAELSRSVSAKLLNAGSFLHPSEGITFF IGSIEPDGTLQNVFLTDQRDPSVEITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFSYPLGDLSPARA AGARPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLMGGFSRFGIWKQVLGAFVLLIL IEGMRGVVADPVRENAAMWPLIYLPATLGVMISVLFLHLATRPQALMRLTRRKTQETDA
Sequences:
>Translated_379_residues MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNLVRMVLPLAAFAATVWVTNRL NSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLFLLPASLAQMQFREAELSRSVSAKLLNAGSFLHPSEGITFF IGSIEPDGTLQNVFLTDQRDPSVEITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFSYPLGDLSPARA AGARPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLMGGFSRFGIWKQVLGAFVLLIL IEGMRGVVADPVRENAAMWPLIYLPATLGVMISVLFLHLATRPQALMRLTRRKTQETDA >Mature_378_residues SRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNLVRMVLPLAAFAATVWVTNRLN SESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLFLLPASLAQMQFREAELSRSVSAKLLNAGSFLHPSEGITFFI GSIEPDGTLQNVFLTDQRDPSVEITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFSYPLGDLSPARAA GARPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLMGGFSRFGIWKQVLGAFVLLILI EGMRGVVADPVRENAAMWPLIYLPATLGVMISVLFLHLATRPQALMRLTRRKTQETDA
Specific function: Unknown
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41827; Mature: 41696
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH VRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLF HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLPASLAQMQFREAELSRSVSAKLLNAGSFLHPSEGITFFIGSIEPDGTLQNVFLTDQRD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCC PSVEITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFSYPLGDLSPARA CCEEEEEECCCEEEEEECCCCEEEEECCHHHHHHHHCCCCCHHEECCCCCCCCCCCCHHH AGARPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLMG CCCCCCCCCCHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFSRFGIWKQVLGAFVLLILIEGMRGVVADPVRENAAMWPLIYLPATLGVMISVLFLHLA CHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH TRPQALMRLTRRKTQETDA CCHHHHHHHHHHHHCCCCC >Mature Secondary Structure SRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH VRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLF HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLPASLAQMQFREAELSRSVSAKLLNAGSFLHPSEGITFFIGSIEPDGTLQNVFLTDQRD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCC PSVEITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFSYPLGDLSPARA CCEEEEEECCCEEEEEECCCCEEEEECCHHHHHHHHCCCCCHHEECCCCCCCCCCCCHHH AGARPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLMG CCCCCCCCCCHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFSRFGIWKQVLGAFVLLILIEGMRGVVADPVRENAAMWPLIYLPATLGVMISVLFLHLA CHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH TRPQALMRLTRRKTQETDA CCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA