| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is fabG [H]
Identifier: 99080762
GI number: 99080762
Start: 982763
End: 983518
Strand: Reverse
Name: fabG [H]
Synonym: TM1040_0921
Alternate gene names: 99080762
Gene position: 983518-982763 (Counterclockwise)
Preceding gene: 99080763
Following gene: 99080758
Centisome position: 30.73
GC content: 63.36
Gene sequence:
>756_bases ATGAAACTCGCAACCACGCGCGCTGTGATCACGGGCGGCGCATCCGGTCTCGGCGAGGCCACCGCCCGTCATTTCCGTAA CGCTGGCGCTCAGGTCACAATTCTGGATCGCGATGGTGATCGGGGTGCCAAGATCGCGGAGACAATCGGAGCCCATTTTG TCGAGACCGATGTCACCAGCGAAGAAAGCGTTGCGGCGGCGATGGCCTATGCGGTCGACAAAATGGGCGGGTTGAGCGCA GCGGTGAATTGCGCAGGCATTGCTCATGCGATCAAAACCGTCGGGCGGGATGGTCCGCATCCGCTGGGCGCGTTTCAGAA AACCGTCGACATCAATCTGGTCGGCAGCTTCAACGTGGCGCGCCTCGCCGCAGCAGAAATCAGCAAGTCTACGCCCGAGG CGGATGGCGCGCGCGGTGTCATCATCAACACGGCTTCGATCGCAGCCTTTGACGGCCAAAAGGGCCAGGCGGCCTATGCG GCCTCCAAGGGCGGCATCGTGGGCATGACCCTGCCCATGGCCCGCGATCTGGCGTCCTCGGGCATCCGCGTGATGGCCAT CGCACCGGGGATCTTTATGACGCCGATGCTGGCGGGACTGCCAGAGGAGGCACAGGCGCAGCTGGCCGCTGATGTGCCAA ACCCGGCGCGTTTGGGCCAGCCCGAGGAATACGCACGTCTGGCAGGGTTCATTGTCGAAATGGGATATCTCAACGGGGAG GTCATTCGCCTCGATGGCGCGCTGCGGATGCGCTGA
Upstream 100 bases:
>100_bases CGCATGCATTGTCGAGAACTGACAATGGCGCGGGACTGGACAGAATGGCTCTGCCGTGGTTATTTGAACGTATGTTCATT TCATGGGAGGAGCGGGACAG
Downstream 100 bases:
>100_bases GGACAACTGCGCCTGCGATCTAAGACCTCTCCCGCCTGTGCTCACCGCCCCCTGAGGGGACGGATTGATCCGGTTGGGCC GCGCGCCGCGCGCGCCCCGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MKLATTRAVITGGASGLGEATARHFRNAGAQVTILDRDGDRGAKIAETIGAHFVETDVTSEESVAAAMAYAVDKMGGLSA AVNCAGIAHAIKTVGRDGPHPLGAFQKTVDINLVGSFNVARLAAAEISKSTPEADGARGVIINTASIAAFDGQKGQAAYA ASKGGIVGMTLPMARDLASSGIRVMAIAPGIFMTPMLAGLPEEAQAQLAADVPNPARLGQPEEYARLAGFIVEMGYLNGE VIRLDGALRMR
Sequences:
>Translated_251_residues MKLATTRAVITGGASGLGEATARHFRNAGAQVTILDRDGDRGAKIAETIGAHFVETDVTSEESVAAAMAYAVDKMGGLSA AVNCAGIAHAIKTVGRDGPHPLGAFQKTVDINLVGSFNVARLAAAEISKSTPEADGARGVIINTASIAAFDGQKGQAAYA ASKGGIVGMTLPMARDLASSGIRVMAIAPGIFMTPMLAGLPEEAQAQLAADVPNPARLGQPEEYARLAGFIVEMGYLNGE VIRLDGALRMR >Mature_251_residues MKLATTRAVITGGASGLGEATARHFRNAGAQVTILDRDGDRGAKIAETIGAHFVETDVTSEESVAAAMAYAVDKMGGLSA AVNCAGIAHAIKTVGRDGPHPLGAFQKTVDINLVGSFNVARLAAAEISKSTPEADGARGVIINTASIAAFDGQKGQAAYA ASKGGIVGMTLPMARDLASSGIRVMAIAPGIFMTPMLAGLPEEAQAQLAADVPNPARLGQPEEYARLAGFIVEMGYLNGE VIRLDGALRMR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4758504, Length=248, Percent_Identity=56.8548387096774, Blast_Score=257, Evalue=8e-69, Organism=Homo sapiens, GI83715985, Length=248, Percent_Identity=53.6290322580645, Blast_Score=233, Evalue=1e-61, Organism=Homo sapiens, GI15277342, Length=266, Percent_Identity=30.4511278195489, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=32, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI59889578, Length=223, Percent_Identity=30.0448430493274, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=30.2439024390244, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI5031737, Length=261, Percent_Identity=29.5019157088123, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=31.9796954314721, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=25.78125, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI87082100, Length=267, Percent_Identity=31.8352059925094, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1787905, Length=258, Percent_Identity=29.0697674418605, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=29.0322580645161, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1789057, Length=207, Percent_Identity=34.2995169082126, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI87082160, Length=260, Percent_Identity=28.0769230769231, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790717, Length=259, Percent_Identity=28.957528957529, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=30.1204819277108, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=29.8804780876494, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789208, Length=262, Percent_Identity=29.3893129770992, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=25.0996015936255, Blast_Score=64, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17538182, Length=245, Percent_Identity=53.0612244897959, Blast_Score=247, Evalue=3e-66, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=30.8300395256917, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=30.1204819277108, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560676, Length=266, Percent_Identity=26.6917293233083, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=28.3018867924528, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17563726, Length=273, Percent_Identity=29.3040293040293, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=30.6513409961686, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561402, Length=262, Percent_Identity=27.4809160305344, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=27.1375464684015, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=28.8461538461538, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.4182509505703, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=26.1992619926199, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=28.6259541984733, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=28.6792452830189, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=27.8625954198473, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=26.7175572519084, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=25, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=242, Percent_Identity=27.6859504132231, Blast_Score=72, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6320089, Length=222, Percent_Identity=25.6756756756757, Blast_Score=65, Evalue=8e-12, Organism=Drosophila melanogaster, GI17737361, Length=247, Percent_Identity=54.251012145749, Blast_Score=259, Evalue=1e-69, Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=33.59375, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI21355319, Length=258, Percent_Identity=29.4573643410853, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21357041, Length=231, Percent_Identity=27.7056277056277, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI28571526, Length=231, Percent_Identity=27.7056277056277, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24644339, Length=239, Percent_Identity=27.6150627615063, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI221331218, Length=211, Percent_Identity=27.4881516587678, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24665243, Length=211, Percent_Identity=27.4881516587678, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI28571387, Length=212, Percent_Identity=27.8301886792453, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI221331216, Length=212, Percent_Identity=27.3584905660377, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24665247, Length=212, Percent_Identity=27.3584905660377, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 25718; Mature: 25718
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS00061 ADH_SHORT ; PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLATTRAVITGGASGLGEATARHFRNAGAQVTILDRDGDRGAKIAETIGAHFVETDVTS CCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCHHEECCCCC EESVAAAMAYAVDKMGGLSAAVNCAGIAHAIKTVGRDGPHPLGAFQKTVDINLVGSFNVA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEEEEECCCHH RLAAAEISKSTPEADGARGVIINTASIAAFDGQKGQAAYAASKGGIVGMTLPMARDLASS HHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEECCCCEEEEEHHHHHHHHHC GIRVMAIAPGIFMTPMLAGLPEEAQAQLAADVPNPARLGQPEEYARLAGFIVEMGYLNGE CEEEEEECCCHHHHHHHHCCCHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCE VIRLDGALRMR EEEECCEEECC >Mature Secondary Structure MKLATTRAVITGGASGLGEATARHFRNAGAQVTILDRDGDRGAKIAETIGAHFVETDVTS CCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCHHEECCCCC EESVAAAMAYAVDKMGGLSAAVNCAGIAHAIKTVGRDGPHPLGAFQKTVDINLVGSFNVA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEEEEECCCHH RLAAAEISKSTPEADGARGVIINTASIAAFDGQKGQAAYAASKGGIVGMTLPMARDLASS HHHHHHHHCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEECCCCEEEEEHHHHHHHHHC GIRVMAIAPGIFMTPMLAGLPEEAQAQLAADVPNPARLGQPEEYARLAGFIVEMGYLNGE CEEEEEECCCHHHHHHHHCCCHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCE VIRLDGALRMR EEEECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]