| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is mrcA [H]
Identifier: 99080708
GI number: 99080708
Start: 922143
End: 924650
Strand: Direct
Name: mrcA [H]
Synonym: TM1040_0867
Alternate gene names: 99080708
Gene position: 922143-924650 (Clockwise)
Preceding gene: 99080707
Following gene: 99080709
Centisome position: 28.81
GC content: 61.16
Gene sequence:
>2508_bases GTGATCAGATTCATTCTGTCGATCTTTGGATCCATATTCAGTACCATCACCCTTGGCATCGGGGTGGTAGCCCTGTCCAT TGGGGCGATCTTCTGGGTCTACGGCCGCGATCTGCCGAGCCATGAGTCGCTGGCGCAGTATCAGCCGCCCACCATCAGCC GGATCTTTTCGGGCGAGGGACAGCTGATCGACGAATTCGCCAAGGAACGACGCCTGTTCACACCGTCCGAGGAAATCCCG GCGCTGGTCAAACAAGCCTTCATCTCGGCGGAGGACAAGAATTTCTACTCTCACGCGGGCTATGACGCACGCGGTATTCT CGCCGCCGCGGTCGAGGCGGTGAAATCGCGCGGTGAAAACGTGCGCGGGGCCTCGACGATCACCCAGCAGGTGATGAAGA ACTTCCTTTTGTCCGGCGACCGTCGCGCCGAGCGCAAGATCAAGGAAATCATCCTCGCCACCCGCCTTGAAGAAACGCTC TCCAAGGACAAGATCCTCGAGCTCTACCTCAATGAGATCTTTCTCGGTCAGAACTCCTATGGGGTGACGGCAGCCGCACA GACCTATTTCAACAAGACCCTCGGCGAGCTGGAGCCGCATGAGGCCGCAACCCTGGCCTCGATGCCCAAAGCGCCCTCGG ATTATCACCCGGTGCGGCAGCGCGAACGCCTTCTCAACCGTCGCAACTATGTGCTGCGCGAAATGAAAGAGAACGGCTAC ATCACCGAAGCCGTCTACGAGGTGGAACGCAACCAGCCGCTGCGCTCGGTTCAGAACGGTGATTTCGACGCCTTCCGCAC CGCCTTGCCGCCGCGCGATTATTTCACCGATGAAATCCGCCGACAGTTGTCAGTCGACTTTGGCGAGGGCGAGTTCTTTA CCGGTGGTTTCACCATCCGCGCCACCATCGACGAGGAAATGCAGGACGAAGCAGCGCTTGCCATGCGCAAGGGGCTTGAG GAATTTGATCGCAGCACGGGGATCTGGCAGGGTCCGATTGCCGAGATCGACCCCGCGCGCCTTGCATCCGAGGAGAGCTG GCGCGAGGCGCTGAGCGAAGCCGAAGCTGCCCGTGATATCATCACCGAGGATGGCGCCTGGCATCCGGCTGTTGTGCTCA AGGTCGAAGACAATGCGCTCACGGTTGGGGTCGAGGGCTTTGGCGGCACCGGCACCATTCCACGCTCTGACATCAAGTGG ATGAAGGGCAACTTCTTCGACAACTTCAAACCCGGCGACGTGATTCACGCCATGGCGATCCGCGAGGGCGAGGCTGTCAA ACACTGGTCGGCGCGTCAGGTGCCCGAAGTGCAGGGCGGCTTTGTGGCGATGGATGTGAACTCCGGCCGCGTTCTGGCCA TGCAGGGGGGCTTTTCCTACCAGCACTCGGTGTTCAACCGGGCCACGCAGGCGCAACGTCAGCCGGGTTCGAGCTTCAAA CCCTTCGTTTATGCGGCGGCGCTCGACAGTGGCTATAGCCCCGCAACCATCGTGATCGACGCCCCGATCGAGATCAACAC GCCCCAGGGTGTCTGGCGGCCCAAGAACTCCACCAATAAATTCTATGGCCCCACACCTCTGCGCACCGGCATCGAGATGA GCCGGAACCTGATGACCATCCGTCTGGCGCAGGAGGTGGGCATGCCGGTTGTGGCGGGCTACGCCGAGCGCTTTGGCGTC TATGACAACATGGGCACCTTCCTTGCAAACTCGCTCGGCTCTGAGGAGACGACGCTGTACAAAATGGTGGCTGCCTATGC GATGTTTGCCAACGGGGGCGAGCGTGTCGAACCCACGCTGGTGGACCGTATTCAGGACCGCTTTGGCCGCACCATCTACC GTCACGATGACCGCGATTGCGTTGATTGTAGCGCCACCGAGCTTGAGCAAGGGATCGCGCCCAAGATCGTGACCAACCGC GAACAGGTGATGGACCCGATCACCGCCTATCAGCTCACTTCGATGCTAAAGGGCGTGGTCGATCGCGGCACCGCGTCAAG CGTGATCAACCTGCCGGTGCCCGCAGCGGGCAAGACCGGTACCACCAACGACGCGCGCGATGCGTGGTTTGTGGGCTTCA CCTCCAACATCGTGGCGGGCTGCTACTTTGGCTATGACAACCCCCGTCCCATGAAGGGCGGTCGGGGGTACGGCGGCACG CTCTGCGGTCCCGTGTTCCAGCAGTTCATGCAGAAGGCGACCGAGAAATACGGAGGCGGCCCGTTCGACGTGCCCCCGGG TGGTCACTTCATCAAGATCGACCGCTACACTGGCGGACGTCTTCCCAACGAGGCAGGCGGGGCAAATGTGGTCGCCGAGT ATTTCCGCGATGGTGAGGAGCCGATCTTTGGTCTCACCTTTGATGGGGGCTTTGGCATGGGGTCGAACCTGCCGCTCTTT GAAGAGGTCACCGAATCCGGCCGTCAGGTCACCACCTCCAGCGGCGGAACCGCCGTCCTCGGCCCAAAGGCGAGCTTCGG CGACGTCAGCTCTGGCGGGCTTTACTGA
Upstream 100 bases:
>100_bases CTCCTAACCGGTGGGGCCCTCGGGCTGCCGCCATAACACGTTTTGACCCTTGTCACCTTGCCCCCTATAAGGGCCGCATC GTGCGAGAGAGGCCCACACT
Downstream 100 bases:
>100_bases CACAGTCTTACATTTGAGGCGGGCAGGCGGGTGATCCTCGCTTGCCCGCGCTCTTGTAGTGGTCCCGGACGTGCGGTATC ACCCATCTTCAAACCAGACT
Product: penicillin-binding protein 1A
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 835; Mature: 835
Protein sequence:
>835_residues MIRFILSIFGSIFSTITLGIGVVALSIGAIFWVYGRDLPSHESLAQYQPPTISRIFSGEGQLIDEFAKERRLFTPSEEIP ALVKQAFISAEDKNFYSHAGYDARGILAAAVEAVKSRGENVRGASTITQQVMKNFLLSGDRRAERKIKEIILATRLEETL SKDKILELYLNEIFLGQNSYGVTAAAQTYFNKTLGELEPHEAATLASMPKAPSDYHPVRQRERLLNRRNYVLREMKENGY ITEAVYEVERNQPLRSVQNGDFDAFRTALPPRDYFTDEIRRQLSVDFGEGEFFTGGFTIRATIDEEMQDEAALAMRKGLE EFDRSTGIWQGPIAEIDPARLASEESWREALSEAEAARDIITEDGAWHPAVVLKVEDNALTVGVEGFGGTGTIPRSDIKW MKGNFFDNFKPGDVIHAMAIREGEAVKHWSARQVPEVQGGFVAMDVNSGRVLAMQGGFSYQHSVFNRATQAQRQPGSSFK PFVYAAALDSGYSPATIVIDAPIEINTPQGVWRPKNSTNKFYGPTPLRTGIEMSRNLMTIRLAQEVGMPVVAGYAERFGV YDNMGTFLANSLGSEETTLYKMVAAYAMFANGGERVEPTLVDRIQDRFGRTIYRHDDRDCVDCSATELEQGIAPKIVTNR EQVMDPITAYQLTSMLKGVVDRGTASSVINLPVPAAGKTGTTNDARDAWFVGFTSNIVAGCYFGYDNPRPMKGGRGYGGT LCGPVFQQFMQKATEKYGGGPFDVPPGGHFIKIDRYTGGRLPNEAGGANVVAEYFRDGEEPIFGLTFDGGFGMGSNLPLF EEVTESGRQVTTSSGGTAVLGPKASFGDVSSGGLY
Sequences:
>Translated_835_residues MIRFILSIFGSIFSTITLGIGVVALSIGAIFWVYGRDLPSHESLAQYQPPTISRIFSGEGQLIDEFAKERRLFTPSEEIP ALVKQAFISAEDKNFYSHAGYDARGILAAAVEAVKSRGENVRGASTITQQVMKNFLLSGDRRAERKIKEIILATRLEETL SKDKILELYLNEIFLGQNSYGVTAAAQTYFNKTLGELEPHEAATLASMPKAPSDYHPVRQRERLLNRRNYVLREMKENGY ITEAVYEVERNQPLRSVQNGDFDAFRTALPPRDYFTDEIRRQLSVDFGEGEFFTGGFTIRATIDEEMQDEAALAMRKGLE EFDRSTGIWQGPIAEIDPARLASEESWREALSEAEAARDIITEDGAWHPAVVLKVEDNALTVGVEGFGGTGTIPRSDIKW MKGNFFDNFKPGDVIHAMAIREGEAVKHWSARQVPEVQGGFVAMDVNSGRVLAMQGGFSYQHSVFNRATQAQRQPGSSFK PFVYAAALDSGYSPATIVIDAPIEINTPQGVWRPKNSTNKFYGPTPLRTGIEMSRNLMTIRLAQEVGMPVVAGYAERFGV YDNMGTFLANSLGSEETTLYKMVAAYAMFANGGERVEPTLVDRIQDRFGRTIYRHDDRDCVDCSATELEQGIAPKIVTNR EQVMDPITAYQLTSMLKGVVDRGTASSVINLPVPAAGKTGTTNDARDAWFVGFTSNIVAGCYFGYDNPRPMKGGRGYGGT LCGPVFQQFMQKATEKYGGGPFDVPPGGHFIKIDRYTGGRLPNEAGGANVVAEYFRDGEEPIFGLTFDGGFGMGSNLPLF EEVTESGRQVTTSSGGTAVLGPKASFGDVSSGGLY >Mature_835_residues MIRFILSIFGSIFSTITLGIGVVALSIGAIFWVYGRDLPSHESLAQYQPPTISRIFSGEGQLIDEFAKERRLFTPSEEIP ALVKQAFISAEDKNFYSHAGYDARGILAAAVEAVKSRGENVRGASTITQQVMKNFLLSGDRRAERKIKEIILATRLEETL SKDKILELYLNEIFLGQNSYGVTAAAQTYFNKTLGELEPHEAATLASMPKAPSDYHPVRQRERLLNRRNYVLREMKENGY ITEAVYEVERNQPLRSVQNGDFDAFRTALPPRDYFTDEIRRQLSVDFGEGEFFTGGFTIRATIDEEMQDEAALAMRKGLE EFDRSTGIWQGPIAEIDPARLASEESWREALSEAEAARDIITEDGAWHPAVVLKVEDNALTVGVEGFGGTGTIPRSDIKW MKGNFFDNFKPGDVIHAMAIREGEAVKHWSARQVPEVQGGFVAMDVNSGRVLAMQGGFSYQHSVFNRATQAQRQPGSSFK PFVYAAALDSGYSPATIVIDAPIEINTPQGVWRPKNSTNKFYGPTPLRTGIEMSRNLMTIRLAQEVGMPVVAGYAERFGV YDNMGTFLANSLGSEETTLYKMVAAYAMFANGGERVEPTLVDRIQDRFGRTIYRHDDRDCVDCSATELEQGIAPKIVTNR EQVMDPITAYQLTSMLKGVVDRGTASSVINLPVPAAGKTGTTNDARDAWFVGFTSNIVAGCYFGYDNPRPMKGGRGYGGT LCGPVFQQFMQKATEKYGGGPFDVPPGGHFIKIDRYTGGRLPNEAGGANVVAEYFRDGEEPIFGLTFDGGFGMGSNLPLF EEVTESGRQVTTSSGGTAVLGPKASFGDVSSGGLY
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=839, Percent_Identity=31.3468414779499, Blast_Score=367, Evalue=1e-102, Organism=Escherichia coli, GI1786343, Length=260, Percent_Identity=33.8461538461538, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI1789601, Length=168, Percent_Identity=36.9047619047619, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1788867, Length=178, Percent_Identity=34.2696629213483, Blast_Score=91, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 91729; Mature: 91729
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRFILSIFGSIFSTITLGIGVVALSIGAIFWVYGRDLPSHESLAQYQPPTISRIFSGEG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHCCCC QLIDEFAKERRLFTPSEEIPALVKQAFISAEDKNFYSHAGYDARGILAAAVEAVKSRGEN HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCC VRGASTITQQVMKNFLLSGDRRAERKIKEIILATRLEETLSKDKILELYLNEIFLGQNSY CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GVTAAAQTYFNKTLGELEPHEAATLASMPKAPSDYHPVRQRERLLNRRNYVLREMKENGY CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC ITEAVYEVERNQPLRSVQNGDFDAFRTALPPRDYFTDEIRRQLSVDFGEGEFFTGGFTIR CHHHHHHHHCCCCHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEECCEEEE ATIDEEMQDEAALAMRKGLEEFDRSTGIWQGPIAEIDPARLASEESWREALSEAEAARDI EECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHH ITEDGAWHPAVVLKVEDNALTVGVEGFGGTGTIPRSDIKWMKGNFFDNFKPGDVIHAMAI HCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEHH REGEAVKHWSARQVPEVQGGFVAMDVNSGRVLAMQGGFSYQHSVFNRATQAQRQPGSSFK CCCCHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC PFVYAAALDSGYSPATIVIDAPIEINTPQGVWRPKNSTNKFYGPTPLRTGIEMSRNLMTI CEEEEEECCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEE RLAQEVGMPVVAGYAERFGVYDNMGTFLANSLGSEETTLYKMVAAYAMFANGGERVEPTL EEHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHH VDRIQDRFGRTIYRHDDRDCVDCSATELEQGIAPKIVTNREQVMDPITAYQLTSMLKGVV HHHHHHHHCCCEEECCCCCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHH DRGTASSVINLPVPAAGKTGTTNDARDAWFVGFTSNIVAGCYFGYDNPRPMKGGRGYGGT CCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHEEEEECCCCCCCCCCCCCCCCC LCGPVFQQFMQKATEKYGGGPFDVPPGGHFIKIDRYTGGRLPNEAGGANVVAEYFRDGEE HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC PIFGLTFDGGFGMGSNLPLFEEVTESGRQVTTSSGGTAVLGPKASFGDVSSGGLY CEEEEEECCCCCCCCCCCHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MIRFILSIFGSIFSTITLGIGVVALSIGAIFWVYGRDLPSHESLAQYQPPTISRIFSGEG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHCCCC QLIDEFAKERRLFTPSEEIPALVKQAFISAEDKNFYSHAGYDARGILAAAVEAVKSRGEN HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCC VRGASTITQQVMKNFLLSGDRRAERKIKEIILATRLEETLSKDKILELYLNEIFLGQNSY CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GVTAAAQTYFNKTLGELEPHEAATLASMPKAPSDYHPVRQRERLLNRRNYVLREMKENGY CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC ITEAVYEVERNQPLRSVQNGDFDAFRTALPPRDYFTDEIRRQLSVDFGEGEFFTGGFTIR CHHHHHHHHCCCCHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEECCEEEE ATIDEEMQDEAALAMRKGLEEFDRSTGIWQGPIAEIDPARLASEESWREALSEAEAARDI EECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHH ITEDGAWHPAVVLKVEDNALTVGVEGFGGTGTIPRSDIKWMKGNFFDNFKPGDVIHAMAI HCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEHH REGEAVKHWSARQVPEVQGGFVAMDVNSGRVLAMQGGFSYQHSVFNRATQAQRQPGSSFK CCCCHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC PFVYAAALDSGYSPATIVIDAPIEINTPQGVWRPKNSTNKFYGPTPLRTGIEMSRNLMTI CEEEEEECCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEE RLAQEVGMPVVAGYAERFGVYDNMGTFLANSLGSEETTLYKMVAAYAMFANGGERVEPTL EEHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHH VDRIQDRFGRTIYRHDDRDCVDCSATELEQGIAPKIVTNREQVMDPITAYQLTSMLKGVV HHHHHHHHCCCEEECCCCCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHH DRGTASSVINLPVPAAGKTGTTNDARDAWFVGFTSNIVAGCYFGYDNPRPMKGGRGYGGT CCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHEEEEECCCCCCCCCCCCCCCCC LCGPVFQQFMQKATEKYGGGPFDVPPGGHFIKIDRYTGGRLPNEAGGANVVAEYFRDGEE HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC PIFGLTFDGGFGMGSNLPLFEEVTESGRQVTTSSGGTAVLGPKASFGDVSSGGLY CEEEEEECCCCCCCCCCCHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA