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The map label for this gene is ompW [H]

Identifier: 99080575

GI number: 99080575

Start: 791464

End: 792066

Strand: Reverse

Name: ompW [H]

Synonym: TM1040_0734

Alternate gene names: 99080575

Gene position: 792066-791464 (Counterclockwise)

Preceding gene: 99080605

Following gene: 99080571

Centisome position: 24.74

GC content: 60.86

Gene sequence:

>603_bases
ATGAAAACTCTGGTTTCCGCCCTCGCACTGGGCGTTGCCGCCGCAAGCTTTGCTGCCCCCGCCATGGCCCAATCTCAGGG
CGACTGGACCTTTGGTGTCGGTATCATCAACGTGAACCCGAAGTCCGACAATGGCACGCTTGCCGGCGCTGCGGCCACGA
TTGACGACAACACCCAGCTGTCGCTCACGGCGGAGTATTTCATCCGCGACAACCTCGGCATTGAACTCTTGGCGGCCTCG
CCGTTTGAGCACGACATCGCGCTTGGAGGCAGCAACATCGGCTCCACCAAACAACTGCCGCCGACCCTGTCGCTGGTCTA
TCATATCCCCACCAAGGGCAAGGTGACCCCCTTTGTTGGTGTCGGCGTGAACTACACCACCTTCTTCTCGGAAGAGTCGT
CGCTTGGCACGCTCGACCTCGACAACAGCTTTGGCTTTGCCGCAACGGTGGGGGCTGACTGGCAGACCTCGGAGCGCGGC
GCGTTGCGTCTGAACGTGCGCTACATGGACATCGACACCGACGCACGGCTCAACGGTGCACCCATTGGCAAGGCGGAGAT
TGATCCGGTCACTGTGGGTGTCTCTTACGTGCACCGCTTCTGA

Upstream 100 bases:

>100_bases
TTCCAAAGGGAAAGGAGGGTCTCATTTGATCTAGATCAGAGCGCGCGCACCTCATCGCTGGCAATGTCGCGCCATACTGA
TGAAAGAAGGGATTCTCCCC

Downstream 100 bases:

>100_bases
TCCTTTGTCCAAGCCGCGCGCATTTTCCGCGCAGCATTTCCATCCCAGTTGCGCCACCTTCATGGTGGCGCTTTTTTGTT
CCACCGTCCTTGCGCGGCGC

Product: OmpW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MKTLVSALALGVAAASFAAPAMAQSQGDWTFGVGIINVNPKSDNGTLAGAAATIDDNTQLSLTAEYFIRDNLGIELLAAS
PFEHDIALGGSNIGSTKQLPPTLSLVYHIPTKGKVTPFVGVGVNYTTFFSEESSLGTLDLDNSFGFAATVGADWQTSERG
ALRLNVRYMDIDTDARLNGAPIGKAEIDPVTVGVSYVHRF

Sequences:

>Translated_200_residues
MKTLVSALALGVAAASFAAPAMAQSQGDWTFGVGIINVNPKSDNGTLAGAAATIDDNTQLSLTAEYFIRDNLGIELLAAS
PFEHDIALGGSNIGSTKQLPPTLSLVYHIPTKGKVTPFVGVGVNYTTFFSEESSLGTLDLDNSFGFAATVGADWQTSERG
ALRLNVRYMDIDTDARLNGAPIGKAEIDPVTVGVSYVHRF
>Mature_200_residues
MKTLVSALALGVAAASFAAPAMAQSQGDWTFGVGIINVNPKSDNGTLAGAAATIDDNTQLSLTAEYFIRDNLGIELLAAS
PFEHDIALGGSNIGSTKQLPPTLSLVYHIPTKGKVTPFVGVGVNYTTFFSEESSLGTLDLDNSFGFAATVGADWQTSERG
ALRLNVRYMDIDTDARLNGAPIGKAEIDPVTVGVSYVHRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=215, Percent_Identity=35.8139534883721, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 20999; Mature: 20999

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLVSALALGVAAASFAAPAMAQSQGDWTFGVGIINVNPKSDNGTLAGAAATIDDNTQL
CHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCCEE
SLTAEYFIRDNLGIELLAASPFEHDIALGGSNIGSTKQLPPTLSLVYHIPTKGKVTPFVG
EEEEEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEEEE
VGVNYTTFFSEESSLGTLDLDNSFGFAATVGADWQTSERGALRLNVRYMDIDTDARLNGA
CCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCC
PIGKAEIDPVTVGVSYVHRF
CCCCCCCCEEEEEHEEEECC
>Mature Secondary Structure
MKTLVSALALGVAAASFAAPAMAQSQGDWTFGVGIINVNPKSDNGTLAGAAATIDDNTQL
CHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCCEE
SLTAEYFIRDNLGIELLAASPFEHDIALGGSNIGSTKQLPPTLSLVYHIPTKGKVTPFVG
EEEEEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEEEE
VGVNYTTFFSEESSLGTLDLDNSFGFAATVGADWQTSERGALRLNVRYMDIDTDARLNGA
CCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCC
PIGKAEIDPVTVGVSYVHRF
CCCCCCCCEEEEEHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]