Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080571
Identifier: 99080571
GI number: 99080571
Start: 787842
End: 788300
Strand: Reverse
Name: 99080571
Synonym: TM1040_0730
Alternate gene names: NA
Gene position: 788300-787842 (Counterclockwise)
Preceding gene: 99080575
Following gene: 99080569
Centisome position: 24.63
GC content: 61.0
Gene sequence:
>459_bases ATGAACTCCCTCATCCCCTCCATTGCACTCGCTGTCGCGATCTACAGCGGCGCTGCCGATGCTCAGGACACCTCGGGCCT GACCGCAGAGCCGCAGGTTGCGACCGGAAAGTTCCTCACCGCCACCGAAGTCAAACCGATCCTGAACGCCACTCAGTCCA ACTGGGTCGCGGTGCGGGAATTCAACGGGCAGGATCTGGTCTATGTGACCCATCTCTGGGCTTGGCGCTGCGGGCTTGCA CAGATGGAGCTTGCCATCAACGAGGGCGACTACGAGGTCTGGGACATGCCCGAATGCCACGCCGACGAGGGCTCTCCCGG CGCCATCAAGAGCGGCGACGGCGACCCCTATCGCAGTTTTGAGTTGGGGTCCGTGCAAACCATCAAGGTGCGTCTGGTCT ATGATGACCTGACCACTGCAGAAGCTGCGTTTGAACGCGCATCTATCATGACCCCCTGA
Upstream 100 bases:
>100_bases CAGAGGGTGCCAGCTTGCCGCAGGTTTGCGGTTCCCTCGGATCAAGCCACAGGGTAACCTGACCAAGATTGTGATCCGAA CCTGCGAAAGGGCCACTGAC
Downstream 100 bases:
>100_bases CTATCCCCCCCTGACGCATCAGAGGGGTGCGATGCCGTCAGGGTCAGCGGGCGTCGTTGACCCCGATCAGCCCCGCCACG ACAGCTGGCAGATCGGCATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 152; Mature: 152
Protein sequence:
>152_residues MNSLIPSIALAVAIYSGAADAQDTSGLTAEPQVATGKFLTATEVKPILNATQSNWVAVREFNGQDLVYVTHLWAWRCGLA QMELAINEGDYEVWDMPECHADEGSPGAIKSGDGDPYRSFELGSVQTIKVRLVYDDLTTAEAAFERASIMTP
Sequences:
>Translated_152_residues MNSLIPSIALAVAIYSGAADAQDTSGLTAEPQVATGKFLTATEVKPILNATQSNWVAVREFNGQDLVYVTHLWAWRCGLA QMELAINEGDYEVWDMPECHADEGSPGAIKSGDGDPYRSFELGSVQTIKVRLVYDDLTTAEAAFERASIMTP >Mature_152_residues MNSLIPSIALAVAIYSGAADAQDTSGLTAEPQVATGKFLTATEVKPILNATQSNWVAVREFNGQDLVYVTHLWAWRCGLA QMELAINEGDYEVWDMPECHADEGSPGAIKSGDGDPYRSFELGSVQTIKVRLVYDDLTTAEAAFERASIMTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16443; Mature: 16443
Theoretical pI: Translated: 4.07; Mature: 4.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLIPSIALAVAIYSGAADAQDTSGLTAEPQVATGKFLTATEVKPILNATQSNWVAVRE CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCEEEEEE FNGQDLVYVTHLWAWRCGLAQMELAINEGDYEVWDMPECHADEGSPGAIKSGDGDPYRSF ECCCCEEEEEEHHHHHCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE ELGSVQTIKVRLVYDDLTTAEAAFERASIMTP ECCCEEEEEEEEEECCCHHHHHHHHHHCCCCC >Mature Secondary Structure MNSLIPSIALAVAIYSGAADAQDTSGLTAEPQVATGKFLTATEVKPILNATQSNWVAVRE CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCEEEEEE FNGQDLVYVTHLWAWRCGLAQMELAINEGDYEVWDMPECHADEGSPGAIKSGDGDPYRSF ECCCCEEEEEEHHHHHCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE ELGSVQTIKVRLVYDDLTTAEAAFERASIMTP ECCCEEEEEEEEEECCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA