Click here to switch to the map view.

The map label for this gene is ycjN [C]

Identifier: 94972333

GI number: 94972333

Start: 151794

End: 153137

Strand: Direct

Name: ycjN [C]

Synonym: Dgeo_2870

Alternate gene names: 94972333

Gene position: 151794-153137 (Clockwise)

Preceding gene: 94972335

Following gene: 94972332

Centisome position: 26.44

GC content: 60.86

Gene sequence:

>1344_bases
ATGAAAAGACTCTCCCTGCTCAGCCTTGCTCTTTGTGCGACTTCACTGGGGGTCAGTGCCCAGGCGGCCACAACCATCAC
CATTGCGACGGTAAATAACCCCGACATGGTGACCATGCAAAAACTCACCCCAGAATTCACAAAGAAGTACCCTGACATCA
ATGTGAAGTGGGTTGTTCTCCCAGAGAATGAGCTGCGCCAGAAGGTAACGCTGGATGTCGCCAGCAACGCCGGGGGTTTC
GATGTGGCCACCGTTGGGACGTATGAGGTGCCGATCTGGGCCAAGAACGGCTGGTTGGATCCGCTCAACCCGATGTTCAA
CAAGGACACCGCCATTGCCAAAAGCTACGACCTGACCGATGTGCTGGAGCCGGTGCGCAAGGGCCTGTCCTACAATGGCC
AGCTCTACGCGCTGCCCTTCTACGCCGAGTCGAGCATGACCTACTACAACAAGGATCTGTTCAAGAAGGCGGGGCTGACC
ATGCCCGCACAGCCCACCTGGCGGCAGATCGAGCAGTTTGCGGCCAAGATTCATAACCCCGCGCAGGGCGTGTACGGGAT
CTGCCTGCGTGGCCTGCCGGGCTGGGGCGAGAACATGGCGCTCTTCACCACGATCGTGAACACGTTCGGCGGGCGCTGGT
ACGACCAGAACTGGAATGCTCAGCTCAACACGCCTGCCTGGAAGAACGCGATGACCTTTTACGTCAATCTGCTGAAGAAG
TATGGTCCTCCCGGTGCCACCAGCAACGGCTTTACCGAAAACCTCACTCTGATGAGTCAGGGCAAATGTGGGATGTGGGT
GGACGCGACGGTGGCGGCAGGCTTCCTCAAAGACCCTGCCTCCAGCAAGATCGTGAACTCGGTGGGCTTTGCCAACGCCC
CGGTCGGCCCCGGCACGCCGCGCGGCAGCAACTGGTTGTGGTCGTGGAGCCTGGCGATTCCCAAGAGCACCAAAAAAGAG
GACGCGGCCTTTAAGTTCATCACCTGGGCGACCTCCAAGGACTACATCGCGCTTGTCGCCAAAGAGAAAGGCACCTGGGC
AGCTGTGCCCCCCGGCACCCGCGCAAGCACCTACGCCAACCCCAATTACAAGAAGGCCGCCGGGGACTTTGCCAGCCTGG
TGCTGAACTCGATCCGGCGCGCCGATCCCACCCGCCCCACCAAAGACCCAGTGCCCTACACCGGTATTCAGTTCGTGGGG
ATCCCGCAGTTCCAGGCGCTCGGCACCCAGGTCGGGCAGTACCTGGCGGGCGCGCTGAGCGGCCAGACCAGCATTGATCA
GGCGCTCAAGCAGGCGCAGGACGCTGCCGCGCGGGTGGCCAAGGAAGGCGGTTACCAGAAGTAA

Upstream 100 bases:

>100_bases
ACGAAGACAGAGGCTTCGGTACGGGTTGTGCGTTTCCTGGCGTCCAGGCCGCCCGCTCTTTCGCTGTCTTGCCGCGCCCC
GCGGTCTCAGGAGGTTTGCT

Downstream 100 bases:

>100_bases
GCCTGCGGACAACGCAACGTCGGAGGAGGGGCGGAAGGGAGCACGCACGCCTTCTGCCCCTCGCTCCCCTTTGAGGTGAT
CTCATGACCACGGCTGCTCC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MKRLSLLSLALCATSLGVSAQAATTITIATVNNPDMVTMQKLTPEFTKKYPDINVKWVVLPENELRQKVTLDVASNAGGF
DVATVGTYEVPIWAKNGWLDPLNPMFNKDTAIAKSYDLTDVLEPVRKGLSYNGQLYALPFYAESSMTYYNKDLFKKAGLT
MPAQPTWRQIEQFAAKIHNPAQGVYGICLRGLPGWGENMALFTTIVNTFGGRWYDQNWNAQLNTPAWKNAMTFYVNLLKK
YGPPGATSNGFTENLTLMSQGKCGMWVDATVAAGFLKDPASSKIVNSVGFANAPVGPGTPRGSNWLWSWSLAIPKSTKKE
DAAFKFITWATSKDYIALVAKEKGTWAAVPPGTRASTYANPNYKKAAGDFASLVLNSIRRADPTRPTKDPVPYTGIQFVG
IPQFQALGTQVGQYLAGALSGQTSIDQALKQAQDAAARVAKEGGYQK

Sequences:

>Translated_447_residues
MKRLSLLSLALCATSLGVSAQAATTITIATVNNPDMVTMQKLTPEFTKKYPDINVKWVVLPENELRQKVTLDVASNAGGF
DVATVGTYEVPIWAKNGWLDPLNPMFNKDTAIAKSYDLTDVLEPVRKGLSYNGQLYALPFYAESSMTYYNKDLFKKAGLT
MPAQPTWRQIEQFAAKIHNPAQGVYGICLRGLPGWGENMALFTTIVNTFGGRWYDQNWNAQLNTPAWKNAMTFYVNLLKK
YGPPGATSNGFTENLTLMSQGKCGMWVDATVAAGFLKDPASSKIVNSVGFANAPVGPGTPRGSNWLWSWSLAIPKSTKKE
DAAFKFITWATSKDYIALVAKEKGTWAAVPPGTRASTYANPNYKKAAGDFASLVLNSIRRADPTRPTKDPVPYTGIQFVG
IPQFQALGTQVGQYLAGALSGQTSIDQALKQAQDAAARVAKEGGYQK
>Mature_447_residues
MKRLSLLSLALCATSLGVSAQAATTITIATVNNPDMVTMQKLTPEFTKKYPDINVKWVVLPENELRQKVTLDVASNAGGF
DVATVGTYEVPIWAKNGWLDPLNPMFNKDTAIAKSYDLTDVLEPVRKGLSYNGQLYALPFYAESSMTYYNKDLFKKAGLT
MPAQPTWRQIEQFAAKIHNPAQGVYGICLRGLPGWGENMALFTTIVNTFGGRWYDQNWNAQLNTPAWKNAMTFYVNLLKK
YGPPGATSNGFTENLTLMSQGKCGMWVDATVAAGFLKDPASSKIVNSVGFANAPVGPGTPRGSNWLWSWSLAIPKSTKKE
DAAFKFITWATSKDYIALVAKEKGTWAAVPPGTRASTYANPNYKKAAGDFASLVLNSIRRADPTRPTKDPVPYTGIQFVG
IPQFQALGTQVGQYLAGALSGQTSIDQALKQAQDAAARVAKEGGYQK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48675; Mature: 48675

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLSLLSLALCATSLGVSAQAATTITIATVNNPDMVTMQKLTPEFTKKYPDINVKWVVL
CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEHHHCCHHHHHHCCCCCEEEEEE
PENELRQKVTLDVASNAGGFDVATVGTYEVPIWAKNGWLDPLNPMFNKDTAIAKSYDLTD
CHHHHHHEEEEEEECCCCCCEEEEECEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCHHH
VLEPVRKGLSYNGQLYALPFYAESSMTYYNKDLFKKAGLTMPAQPTWRQIEQFAAKIHNP
HHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
AQGVYGICLRGLPGWGENMALFTTIVNTFGGRWYDQNWNAQLNTPAWKNAMTFYVNLLKK
CHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEECCCCCEEECCCCHHHHHHHHHHHHHH
YGPPGATSNGFTENLTLMSQGKCGMWVDATVAAGFLKDPASSKIVNSVGFANAPVGPGTP
HCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCC
RGSNWLWSWSLAIPKSTKKEDAAFKFITWATSKDYIALVAKEKGTWAAVPPGTRASTYAN
CCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCEEECCCCCCCCCCCC
PNYKKAAGDFASLVLNSIRRADPTRPTKDPVPYTGIQFVGIPQFQALGTQVGQYLAGALS
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
GQTSIDQALKQAQDAAARVAKEGGYQK
CCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKRLSLLSLALCATSLGVSAQAATTITIATVNNPDMVTMQKLTPEFTKKYPDINVKWVVL
CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEHHHCCHHHHHHCCCCCEEEEEE
PENELRQKVTLDVASNAGGFDVATVGTYEVPIWAKNGWLDPLNPMFNKDTAIAKSYDLTD
CHHHHHHEEEEEEECCCCCCEEEEECEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCHHH
VLEPVRKGLSYNGQLYALPFYAESSMTYYNKDLFKKAGLTMPAQPTWRQIEQFAAKIHNP
HHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
AQGVYGICLRGLPGWGENMALFTTIVNTFGGRWYDQNWNAQLNTPAWKNAMTFYVNLLKK
CHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEECCCCCEEECCCCHHHHHHHHHHHHHH
YGPPGATSNGFTENLTLMSQGKCGMWVDATVAAGFLKDPASSKIVNSVGFANAPVGPGTP
HCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCC
RGSNWLWSWSLAIPKSTKKEDAAFKFITWATSKDYIALVAKEKGTWAAVPPGTRASTYAN
CCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCEEECCCCCCCCCCCC
PNYKKAAGDFASLVLNSIRRADPTRPTKDPVPYTGIQFVGIPQFQALGTQVGQYLAGALS
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
GQTSIDQALKQAQDAAARVAKEGGYQK
CCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA