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The map label for this gene is ydhC [H]

Identifier: 94312817

GI number: 94312817

Start: 433745

End: 434467

Strand: Direct

Name: ydhC [H]

Synonym: Rmet_3889

Alternate gene names: 94312817

Gene position: 433745-434467 (Clockwise)

Preceding gene: 94312812

Following gene: 94312818

Centisome position: 16.81

GC content: 67.77

Gene sequence:

>723_bases
ATGTCTGTGACACAAGCGCTCCCCAAAACCGCCCGGCTCCGCACGCTGGGCATGTCCGCCGAGATCGCGGCGCGGTTGCG
CACGATGATTCAGGAAGGCGAGCTGCCGCCGGGCGTGCGGATCGACGAGAAGGCCTTCTGCGAGGCCTTCGATGTGTCGA
AGACGCCGTTGCGCGAAGCGCTGAAGGTGCTGGTGGCCGAGGGGCTGGTCCTGCATCGCCAGTACATCGGCTATCGCGTG
GCGCCGCTCGATCTCGACGAACTGCGCGCCACATTCGAGACGTTGCACGGGCTGGAGGCACATGCCGGGGAACTGGCGGC
GCAGCGGCTCAGCGATGCAGCCGTGACCAAGATCGAACGTCGCCATCAGGCCATGATCGACGCGCACGACGCCGGACGCC
GCACTGACTACTTCCGCATCAACCAGGAAATCCACCAGCTCATCATCGACGGTGCCGGCAACGCCGTGCTGGCCGGCATC
TATGCAATGCTGATGAGCAAGGTCCACCGCGCCCGTGGCGCGGCCAACGCGGACATGCTGCGCTGGCAGGAATCGCATAC
CGAGCACGAGGAGATCATCGCGGCGCTGCGCGAGCCGGGGCGTCCGCGCCTGGCCGACGTGCTGCGACGGCATTCGGAGA
ACACTGCGAAGGAAGTACTGCGCGTGGTCGAGCAGACGCTGGCCGAGCCCGCGGCGCGCGCGGCGGGTGGCGCGCGGCGC
TGA

Upstream 100 bases:

>100_bases
TGTAATTACAACATCTGTAAGTCATTGATTTATATGGATTATGAATGCACAGATTAGGTGTGTGGTAGCCTCCTGATGGT
GCAAATTCCCCAACCTGGTG

Downstream 100 bases:

>100_bases
CAGGCGCTGATGATTTCTCTCCAAACTGAGCGTCCTGCCGTTTTTCCGATGGATCAGCATCGCTCTTCAGGAATACTGAA
GACGGCTTCACTAATTGTGG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSVTQALPKTARLRTLGMSAEIAARLRTMIQEGELPPGVRIDEKAFCEAFDVSKTPLREALKVLVAEGLVLHRQYIGYRV
APLDLDELRATFETLHGLEAHAGELAAQRLSDAAVTKIERRHQAMIDAHDAGRRTDYFRINQEIHQLIIDGAGNAVLAGI
YAMLMSKVHRARGAANADMLRWQESHTEHEEIIAALREPGRPRLADVLRRHSENTAKEVLRVVEQTLAEPAARAAGGARR

Sequences:

>Translated_240_residues
MSVTQALPKTARLRTLGMSAEIAARLRTMIQEGELPPGVRIDEKAFCEAFDVSKTPLREALKVLVAEGLVLHRQYIGYRV
APLDLDELRATFETLHGLEAHAGELAAQRLSDAAVTKIERRHQAMIDAHDAGRRTDYFRINQEIHQLIIDGAGNAVLAGI
YAMLMSKVHRARGAANADMLRWQESHTEHEEIIAALREPGRPRLADVLRRHSENTAKEVLRVVEQTLAEPAARAAGGARR
>Mature_239_residues
SVTQALPKTARLRTLGMSAEIAARLRTMIQEGELPPGVRIDEKAFCEAFDVSKTPLREALKVLVAEGLVLHRQYIGYRVA
PLDLDELRATFETLHGLEAHAGELAAQRLSDAAVTKIERRHQAMIDAHDAGRRTDYFRINQEIHQLIIDGAGNAVLAGIY
AMLMSKVHRARGAANADMLRWQESHTEHEEIIAALREPGRPRLADVLRRHSENTAKEVLRVVEQTLAEPAARAAGGARR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26627; Mature: 26496

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTQALPKTARLRTLGMSAEIAARLRTMIQEGELPPGVRIDEKAFCEAFDVSKTPLREA
CCHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHH
LKVLVAEGLVLHRQYIGYRVAPLDLDELRATFETLHGLEAHAGELAAQRLSDAAVTKIER
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHQAMIDAHDAGRRTDYFRINQEIHQLIIDGAGNAVLAGIYAMLMSKVHRARGAANADML
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
RWQESHTEHEEIIAALREPGRPRLADVLRRHSENTAKEVLRVVEQTLAEPAARAAGGARR
HHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVTQALPKTARLRTLGMSAEIAARLRTMIQEGELPPGVRIDEKAFCEAFDVSKTPLREA
CHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHH
LKVLVAEGLVLHRQYIGYRVAPLDLDELRATFETLHGLEAHAGELAAQRLSDAAVTKIER
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHQAMIDAHDAGRRTDYFRINQEIHQLIIDGAGNAVLAGIYAMLMSKVHRARGAANADML
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
RWQESHTEHEEIIAALREPGRPRLADVLRRHSENTAKEVLRVVEQTLAEPAARAAGGARR
HHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]