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The map label for this gene is rimN

Identifier: 93007286

GI number: 93007286

Start: 3042161

End: 3042805

Strand: Reverse

Name: rimN

Synonym: Pcryo_2462

Alternate gene names: 93007286

Gene position: 3042805-3042161 (Counterclockwise)

Preceding gene: 93007287

Following gene: 93007285

Centisome position: 99.44

GC content: 45.89

Gene sequence:

>645_bases
ATGTCCTTATCTACACCCCTTATTACTGACTCTACTATTCAAGCGGCTACTTGGCTTAAAAACGGGCAGCTACTTGCTTA
CCCAACCGAAAGTGTGTGGGGCATTGGTTGTGACCCATTCAATAAGCAAGCAGTCATGCGGCTACTTGATATCAAGCAGC
GCCCAATAGAGAAGGGGATGATTGTGGTCACTGATAGTCCCAGCCGCATTACGGCTCTGCTAGAAGGTCTAACGGCTGTA
GAGCGGCAAACCGTACTTGATAGTTGGCAAGCTGATTCTATAAACGCCACTGCCAAACAAGCGCATACTTGGCTACTACC
TATTCCAAAAAATCTGCCGATTACTATTCCATCATGGATTACTGGTGCTCATGATAGTGTTGCCGTACGTGTGATTGATC
ATCCATTGGTTAAGCAACTGTGCGCGCAAATGGTGTCAGTTAGCAATCCTTACGGTTTTGTCGTCTCAACAAGCTGCAAC
CCATCAGGAAAGCCACCTGCTCTGTCACTCATCGAAGCACAGAGTTATTTCTTAGGTGACAATGTAAACTCAGATGAGTG
CGTTGGTTATCTTAAAGGGGAAACACTAGGCTATCAATTGCCAAGCCAAATAGGCGATGCATTGACAGGACAAGTTATTC
GATAG

Upstream 100 bases:

>100_bases
AATGATACTGATGTTTTTAAATATACTTGCAGCACTGCATTTTTTGTAAAATAAATTCACGCTATCTCTTTTCATTCTCT
TTGTTCTAAAGGCATTATTT

Downstream 100 bases:

>100_bases
TCTAATATTTAATAGCCAAAATTTCGCATAACTATCTCTGCTTCTTATTACTTAGCCCTAACGTCTACACTTGTCCCCTT
GTTTTCATAGTGTGCTTTTT

Product: SUA5/yciO/yrdC-like

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSLSTPLITDSTIQAATWLKNGQLLAYPTESVWGIGCDPFNKQAVMRLLDIKQRPIEKGMIVVTDSPSRITALLEGLTAV
ERQTVLDSWQADSINATAKQAHTWLLPIPKNLPITIPSWITGAHDSVAVRVIDHPLVKQLCAQMVSVSNPYGFVVSTSCN
PSGKPPALSLIEAQSYFLGDNVNSDECVGYLKGETLGYQLPSQIGDALTGQVIR

Sequences:

>Translated_214_residues
MSLSTPLITDSTIQAATWLKNGQLLAYPTESVWGIGCDPFNKQAVMRLLDIKQRPIEKGMIVVTDSPSRITALLEGLTAV
ERQTVLDSWQADSINATAKQAHTWLLPIPKNLPITIPSWITGAHDSVAVRVIDHPLVKQLCAQMVSVSNPYGFVVSTSCN
PSGKPPALSLIEAQSYFLGDNVNSDECVGYLKGETLGYQLPSQIGDALTGQVIR
>Mature_213_residues
SLSTPLITDSTIQAATWLKNGQLLAYPTESVWGIGCDPFNKQAVMRLLDIKQRPIEKGMIVVTDSPSRITALLEGLTAVE
RQTVLDSWQADSINATAKQAHTWLLPIPKNLPITIPSWITGAHDSVAVRVIDHPLVKQLCAQMVSVSNPYGFVVSTSCNP
SGKPPALSLIEAQSYFLGDNVNSDECVGYLKGETLGYQLPSQIGDALTGQVIR

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=211, Percent_Identity=38.3886255924171, Blast_Score=131, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_PSYCK (Q1Q7W4)

Other databases:

- EMBL:   CP000323
- RefSeq:   YP_581723.1
- ProteinModelPortal:   Q1Q7W4
- STRING:   Q1Q7W4
- GeneID:   4035564
- GenomeReviews:   CP000323_GR
- KEGG:   pcr:Pcryo_2462
- NMPDR:   fig|335284.3.peg.1897
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- PhylomeDB:   Q1Q7W4
- ProtClustDB:   CLSK839625
- BioCyc:   PCRY335284:PCRYO_2462-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 23158; Mature: 23027

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSTPLITDSTIQAATWLKNGQLLAYPTESVWGIGCDPFNKQAVMRLLDIKQRPIEKGM
CCCCCCCEECCCHHHHHHHCCCCEEEECCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCE
IVVTDSPSRITALLEGLTAVERQTVLDSWQADSINATAKQAHTWLLPIPKNLPITIPSWI
EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCCCCCEECCHHH
TGAHDSVAVRVIDHPLVKQLCAQMVSVSNPYGFVVSTSCNPSGKPPALSLIEAQSYFLGD
CCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEHHHHEECC
NVNSDECVGYLKGETLGYQLPSQIGDALTGQVIR
CCCHHHHEEEECCCCCCEECHHHHHHHHHCCCCC
>Mature Secondary Structure 
SLSTPLITDSTIQAATWLKNGQLLAYPTESVWGIGCDPFNKQAVMRLLDIKQRPIEKGM
CCCCCCEECCCHHHHHHHCCCCEEEECCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCE
IVVTDSPSRITALLEGLTAVERQTVLDSWQADSINATAKQAHTWLLPIPKNLPITIPSWI
EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCCCCCEECCHHH
TGAHDSVAVRVIDHPLVKQLCAQMVSVSNPYGFVVSTSCNPSGKPPALSLIEAQSYFLGD
CCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEHHHHEECC
NVNSDECVGYLKGETLGYQLPSQIGDALTGQVIR
CCCHHHHEEEECCCCCCEECHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA