Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 93007287

GI number: 93007287

Start: 3042904

End: 3044127

Strand: Reverse

Name: smf [H]

Synonym: Pcryo_2463

Alternate gene names: 93007287

Gene position: 3044127-3042904 (Counterclockwise)

Preceding gene: 93007288

Following gene: 93007286

Centisome position: 99.49

GC content: 45.26

Gene sequence:

>1224_bases
ATGATGACGGTAGCCACTTTTACTTTATCAGATGAGCAGCGTGCAATACTGGCGCTGTGGTTTGAGTTAAATGCGTCATT
ATCATCTTATCATAAACTCATTCATAACTATGATAGTGCGCAGCTTGCATGGCAAGCTGGCGTAGAGTCGTGGCGTCAAC
TAGGGATTCATCATAGCCATTTAACTCGTCATGAACATCCAGAGAAAACGCGCGCCAGCATCGATACCATTCAACAAGCA
TTGATAGAAGAAAAGTACGGTCTATTATTTGCCGACCAACCTAATTATCCTGCTCAATTGTTAGAAATCTACGATCCACC
GCCGCTGTTATTTTATCGAGGTAATAGTGAATTGTTGCGTTGGGCACAAATCGCTATTGTTGGCAGTCGCAAGCCGACGG
CACACGCGCAAAAAATTACCTTTGATATGGCACAGTATCTTGCACAAGCAGGCTACGTCATTACCAGTGGACTTGCCATT
GGTGTGGATAAGCGCGCCCATCTTGGCGCATTGGCACAGACCGATGTAGCGTGCCAAGGTCGCACAGTCGGCGTTATGGG
GACGGGTATTGATGTCAATTATCCCAATCATCATGATCGTCTGTTTAGCCAAATTATTGAGCAAGGTGGTTGCATCATCA
GTGAACTATTACCGCATACGCTACCACATAAGCATACTTTTCCACGTCGCAACCGCTTGGTTGCAGGGTTGAGCCTTGCG
ACCATCGTCACTGAGGCAACGATTAAAAGTGGCTCGCTTATTACTGCGCGCCTCACATCCGAGCAAGGTAAGCAAGTTTT
TGCAATTCCAAGTCATATAGACAATAGCAATGCTGAAGGGTGCCATCATTTAATACGTGAGGGTGCGACCTTGGTTTATC
ATCCTCAGCAAGTATTGGATGATATCAGTGTGCAATTGCCAAGCCAGTCTAAGCAGCATCAACTTGATCATAATTCAAAA
GCACAAAGTCTTGATAAGTCAGTATTTAAGCAGTCTGCTACCATTAAAAAAACAATAAAACCTCAGGAAGTGAAGCCAGC
GCCTAGTATTACTGTACCTGAGCATCTAACCACCTTGTTTGAAAAGTTGGACTGGCATGGTCAAGATTTGGATGCACTTA
TCCTTGTGACTGAGCTTGTGCCCGCACAATTGATTGGGCAGTTGATGGAGCTAGAGCTATTGGGCGCAGTGACGGTCCAA
GGTGGACGCTATTTACGTATTTAA

Upstream 100 bases:

>100_bases
GCCACTGAGCATTGGTGATCAGCTGTTGCCACCTCCTTATTTATAACCCTGCCTCAAGTTTTAGCGAGCAGATCTTAGAT
AAGCCTATAAGAGTCATACG

Downstream 100 bases:

>100_bases
TGATACTGATGTTTTTAAATATACTTGCAGCACTGCATTTTTTGTAAAATAAATTCACGCTATCTCTTTTCATTCTCTTT
GTTCTAAAGGCATTATTTAT

Product: DNA processing protein DprA

Products: NA

Alternate protein names: DNA-processing chain A [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MMTVATFTLSDEQRAILALWFELNASLSSYHKLIHNYDSAQLAWQAGVESWRQLGIHHSHLTRHEHPEKTRASIDTIQQA
LIEEKYGLLFADQPNYPAQLLEIYDPPPLLFYRGNSELLRWAQIAIVGSRKPTAHAQKITFDMAQYLAQAGYVITSGLAI
GVDKRAHLGALAQTDVACQGRTVGVMGTGIDVNYPNHHDRLFSQIIEQGGCIISELLPHTLPHKHTFPRRNRLVAGLSLA
TIVTEATIKSGSLITARLTSEQGKQVFAIPSHIDNSNAEGCHHLIREGATLVYHPQQVLDDISVQLPSQSKQHQLDHNSK
AQSLDKSVFKQSATIKKTIKPQEVKPAPSITVPEHLTTLFEKLDWHGQDLDALILVTELVPAQLIGQLMELELLGAVTVQ
GGRYLRI

Sequences:

>Translated_407_residues
MMTVATFTLSDEQRAILALWFELNASLSSYHKLIHNYDSAQLAWQAGVESWRQLGIHHSHLTRHEHPEKTRASIDTIQQA
LIEEKYGLLFADQPNYPAQLLEIYDPPPLLFYRGNSELLRWAQIAIVGSRKPTAHAQKITFDMAQYLAQAGYVITSGLAI
GVDKRAHLGALAQTDVACQGRTVGVMGTGIDVNYPNHHDRLFSQIIEQGGCIISELLPHTLPHKHTFPRRNRLVAGLSLA
TIVTEATIKSGSLITARLTSEQGKQVFAIPSHIDNSNAEGCHHLIREGATLVYHPQQVLDDISVQLPSQSKQHQLDHNSK
AQSLDKSVFKQSATIKKTIKPQEVKPAPSITVPEHLTTLFEKLDWHGQDLDALILVTELVPAQLIGQLMELELLGAVTVQ
GGRYLRI
>Mature_407_residues
MMTVATFTLSDEQRAILALWFELNASLSSYHKLIHNYDSAQLAWQAGVESWRQLGIHHSHLTRHEHPEKTRASIDTIQQA
LIEEKYGLLFADQPNYPAQLLEIYDPPPLLFYRGNSELLRWAQIAIVGSRKPTAHAQKITFDMAQYLAQAGYVITSGLAI
GVDKRAHLGALAQTDVACQGRTVGVMGTGIDVNYPNHHDRLFSQIIEQGGCIISELLPHTLPHKHTFPRRNRLVAGLSLA
TIVTEATIKSGSLITARLTSEQGKQVFAIPSHIDNSNAEGCHHLIREGATLVYHPQQVLDDISVQLPSQSKQHQLDHNSK
AQSLDKSVFKQSATIKKTIKPQEVKPAPSITVPEHLTTLFEKLDWHGQDLDALILVTELVPAQLIGQLMELELLGAVTVQ
GGRYLRI

Specific function: Essential for efficient chromosomal DNA transformation but not required for plasmid transformation [H]

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=341, Percent_Identity=34.3108504398827, Blast_Score=172, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 45202; Mature: 45202

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTVATFTLSDEQRAILALWFELNASLSSYHKLIHNYDSAQLAWQAGVESWRQLGIHHSH
CEEEEEEEECCCCCEEEEEEEHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
LTRHEHPEKTRASIDTIQQALIEEKYGLLFADQPNYPAQLLEIYDPPPLLFYRGNSELLR
HHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHCCCCCEEEECCCHHHHE
WAQIAIVGSRKPTAHAQKITFDMAQYLAQAGYVITSGLAIGVDKRAHLGALAQTDVACQG
EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEECCEEECCCCCHHHCCHHHCCCCCCC
RTVGVMGTGIDVNYPNHHDRLFSQIIEQGGCIISELLPHTLPHKHTFPRRNRLVAGLSLA
CEEEEEECCEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHCEEHHHHHH
TIVTEATIKSGSLITARLTSEQGKQVFAIPSHIDNSNAEGCHHLIREGATLVYHPQQVLD
HHHHHHHCCCCCEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHCCCEEEECHHHHHH
DISVQLPSQSKQHQLDHNSKAQSLDKSVFKQSATIKKTIKPQEVKPAPSITVPEHLTTLF
HHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
EKLDWHGQDLDALILVTELVPAQLIGQLMELELLGAVTVQGGRYLRI
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEECC
>Mature Secondary Structure
MMTVATFTLSDEQRAILALWFELNASLSSYHKLIHNYDSAQLAWQAGVESWRQLGIHHSH
CEEEEEEEECCCCCEEEEEEEHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
LTRHEHPEKTRASIDTIQQALIEEKYGLLFADQPNYPAQLLEIYDPPPLLFYRGNSELLR
HHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHCCCCCEEEECCCHHHHE
WAQIAIVGSRKPTAHAQKITFDMAQYLAQAGYVITSGLAIGVDKRAHLGALAQTDVACQG
EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEECCEEECCCCCHHHCCHHHCCCCCCC
RTVGVMGTGIDVNYPNHHDRLFSQIIEQGGCIISELLPHTLPHKHTFPRRNRLVAGLSLA
CEEEEEECCEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHCEEHHHHHH
TIVTEATIKSGSLITARLTSEQGKQVFAIPSHIDNSNAEGCHHLIREGATLVYHPQQVLD
HHHHHHHCCCCCEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHCCCEEEECHHHHHH
DISVQLPSQSKQHQLDHNSKAQSLDKSVFKQSATIKKTIKPQEVKPAPSITVPEHLTTLF
HHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
EKLDWHGQDLDALILVTELVPAQLIGQLMELELLGAVTVQGGRYLRI
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7768823; 7542800 [H]