Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
---|---|
Accession | NC_007969 |
Length | 3,059,876 |
Click here to switch to the map view.
The map label for this gene is yijE [C]
Identifier: 93006749
GI number: 93006749
Start: 2376013
End: 2376960
Strand: Direct
Name: yijE [C]
Synonym: Pcryo_1925
Alternate gene names: 93006749
Gene position: 2376013-2376960 (Clockwise)
Preceding gene: 93006748
Following gene: 93006754
Centisome position: 77.65
GC content: 44.73
Gene sequence:
>948_bases ATGGCACATACCGATAGCGCAACGTCAGCACGGCAGTCATGGATAGGCACCATTCAAATCATTACAGCCGCTGTCTGCTG GGGTACTTTAGGGATATTCTCAACCTATCTCAACCAAAATGGCTTTAGTGGCTGGCAAACGACCATTTTACGTATCGTGA CCGCCGCTCTTATTATCCTCGTTATGCTGCCAAAACTATGGCCACAGCTAATAAAGTTGCGTCCAAAACAGTGGCTCGGA CTGGCACTACAGTCGTTGATTGGTGTACTCGGCATGTCGGTTTGCTATTTTTTTGCCGTTATCTATGTCGGTGCTGGTCC TGCCGTCGCCTTGCTATATACTGCGCCCGTTTTTAGCTTATTATTTTCAGCATTTTTGCTTAATGAATCCATTACTCGGC AGTCAGCCCTACTGGCACTCATGGCAGTATTTGGTGTCGGCTTGACGATGTTAGGTGAGCAGGCGCAAGTCAACTGGGGT ATTGCATTAGGTTTATTATCAGGCATATGTTATTCCCTATATGGGGTATTGGGTAAGCGCGCTATGCATGATGCGCACCC TGCTCCTTTAGTATTTTTTACCTCTATTATCATCAGTGCTGGCATACTGCTACTACTACCTGAAACCTATAAAACTTATG GACAATTACTAACCTTACCCTTATCTACTTGGGGCTATGCATTAGGATTGTCTTTGATTGGAACCGTCGTACCCTTTGCA CTTTATATGAAGGCATTAGAGAAGCTACCTGCCACCCGTGCATCAGTGTTTACTATCTTTGAGCCTCTAACCGCGATTGC TTTGGCAACGCTATTACTGCATCAATCATTATCTTGGATTCAATATGTCGGCGTCATACTCATTCTGCTAGCAGCTTTAT TTAATGCTGTACTAAATGGTACTACTACTCGCGTACCACGTTGGCTAAAAAGACGGCAAAGGATTTAG
Upstream 100 bases:
>100_bases AGGTTGTCTTTTGTTATTTCAGCATATTATTAAGTAATGAGCCAAAAAGCTTGGACCGCTTATTCTTTGAACTTGGTAAC AAATAAAAATAGAGAGCGAT
Downstream 100 bases:
>100_bases TCGATATCCTATAATCACTTTTAATAGCCTTAGGTTCTTTTCTGTTGAATCAAAAAAAAGCCCCTACTATGAATATAGTT GGGGCTTTTTATTTAGCATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MAHTDSATSARQSWIGTIQIITAAVCWGTLGIFSTYLNQNGFSGWQTTILRIVTAALIILVMLPKLWPQLIKLRPKQWLG LALQSLIGVLGMSVCYFFAVIYVGAGPAVALLYTAPVFSLLFSAFLLNESITRQSALLALMAVFGVGLTMLGEQAQVNWG IALGLLSGICYSLYGVLGKRAMHDAHPAPLVFFTSIIISAGILLLLPETYKTYGQLLTLPLSTWGYALGLSLIGTVVPFA LYMKALEKLPATRASVFTIFEPLTAIALATLLLHQSLSWIQYVGVILILLAALFNAVLNGTTTRVPRWLKRRQRI
Sequences:
>Translated_315_residues MAHTDSATSARQSWIGTIQIITAAVCWGTLGIFSTYLNQNGFSGWQTTILRIVTAALIILVMLPKLWPQLIKLRPKQWLG LALQSLIGVLGMSVCYFFAVIYVGAGPAVALLYTAPVFSLLFSAFLLNESITRQSALLALMAVFGVGLTMLGEQAQVNWG IALGLLSGICYSLYGVLGKRAMHDAHPAPLVFFTSIIISAGILLLLPETYKTYGQLLTLPLSTWGYALGLSLIGTVVPFA LYMKALEKLPATRASVFTIFEPLTAIALATLLLHQSLSWIQYVGVILILLAALFNAVLNGTTTRVPRWLKRRQRI >Mature_314_residues AHTDSATSARQSWIGTIQIITAAVCWGTLGIFSTYLNQNGFSGWQTTILRIVTAALIILVMLPKLWPQLIKLRPKQWLGL ALQSLIGVLGMSVCYFFAVIYVGAGPAVALLYTAPVFSLLFSAFLLNESITRQSALLALMAVFGVGLTMLGEQAQVNWGI ALGLLSGICYSLYGVLGKRAMHDAHPAPLVFFTSIIISAGILLLLPETYKTYGQLLTLPLSTWGYALGLSLIGTVVPFAL YMKALEKLPATRASVFTIFEPLTAIALATLLLHQSLSWIQYVGVILILLAALFNAVLNGTTTRVPRWLKRRQRI
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004779 - InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 34273; Mature: 34141
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHTDSATSARQSWIGTIQIITAAVCWGTLGIFSTYLNQNGFSGWQTTILRIVTAALIIL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH VMLPKLWPQLIKLRPKQWLGLALQSLIGVLGMSVCYFFAVIYVGAGPAVALLYTAPVFSL HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LFSAFLLNESITRQSALLALMAVFGVGLTMLGEQAQVNWGIALGLLSGICYSLYGVLGKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AMHDAHPAPLVFFTSIIISAGILLLLPETYKTYGQLLTLPLSTWGYALGLSLIGTVVPFA HHHCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LYMKALEKLPATRASVFTIFEPLTAIALATLLLHQSLSWIQYVGVILILLAALFNAVLNG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TTTRVPRWLKRRQRI CHHHHHHHHHHHCCC >Mature Secondary Structure AHTDSATSARQSWIGTIQIITAAVCWGTLGIFSTYLNQNGFSGWQTTILRIVTAALIIL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH VMLPKLWPQLIKLRPKQWLGLALQSLIGVLGMSVCYFFAVIYVGAGPAVALLYTAPVFSL HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LFSAFLLNESITRQSALLALMAVFGVGLTMLGEQAQVNWGIALGLLSGICYSLYGVLGKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AMHDAHPAPLVFFTSIIISAGILLLLPETYKTYGQLLTLPLSTWGYALGLSLIGTVVPFA HHHCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LYMKALEKLPATRASVFTIFEPLTAIALATLLLHQSLSWIQYVGVILILLAALFNAVLNG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TTTRVPRWLKRRQRI CHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]