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The map label for this gene is csrA [H]

Identifier: 93006464

GI number: 93006464

Start: 2020625

End: 2020870

Strand: Direct

Name: csrA [H]

Synonym: Pcryo_1640

Alternate gene names: 93006464

Gene position: 2020625-2020870 (Clockwise)

Preceding gene: 93006463

Following gene: 93006465

Centisome position: 66.04

GC content: 47.56

Gene sequence:

>246_bases
ATGTTAATTTTGACACGCCGCGTGGGCGAAACGCTAATGATTGGCGACGAGGTCAGTGTGACTGTCCTAGGTGTCAAAGG
CAATCAAGTACGTATCGGCGTTGATGCGCCAAAAGATATTGCCGTACACCGCGAAGAGATTTATCAGCGCATTCAACATG
AGCGCACGGTACAGTCGCAAATGCAGCATCTTGAGCAAGGCAGCTTTGCGCCTTCATTTGATGATGAAGACTATTTTAAT
CGCTAA

Upstream 100 bases:

>100_bases
CTTTATAACAGCTGCCTATTTTGTGCAGCGATAATGTCCTGTAATTGAGACGCAATCTGATGAGTAATAATCTGTTGATG
CGACATAAGGAGTGTGACGC

Downstream 100 bases:

>100_bases
CCTGTTAGCTTCATATCCAACTATCAATAATCATTAAGCTTGTATCAAGCATGCTAGTTTTGGCTTTTTAACAGCTTTGA
GGTCATTTATTTATGAGTAT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MLILTRRVGETLMIGDEVSVTVLGVKGNQVRIGVDAPKDIAVHREEIYQRIQHERTVQSQMQHLEQGSFAPSFDDEDYFN
R

Sequences:

>Translated_81_residues
MLILTRRVGETLMIGDEVSVTVLGVKGNQVRIGVDAPKDIAVHREEIYQRIQHERTVQSQMQHLEQGSFAPSFDDEDYFN
R
>Mature_81_residues
MLILTRRVGETLMIGDEVSVTVLGVKGNQVRIGVDAPKDIAVHREEIYQRIQHERTVQSQMQHLEQGSFAPSFDDEDYFN
R

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=59, Percent_Identity=84.7457627118644, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 9300; Mature: 9300

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRVGETLMIGDEVSVTVLGVKGNQVRIGVDAPKDIAVHREEIYQRIQHERTVQSQ
CEEEECCCCCEEEECCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
MQHLEQGSFAPSFDDEDYFNR
HHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLILTRRVGETLMIGDEVSVTVLGVKGNQVRIGVDAPKDIAVHREEIYQRIQHERTVQSQ
CEEEECCCCCEEEECCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
MQHLEQGSFAPSFDDEDYFNR
HHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA