Click here to switch to the map view.

The map label for this gene is 93006465

Identifier: 93006465

GI number: 93006465

Start: 2020963

End: 2021337

Strand: Direct

Name: 93006465

Synonym: Pcryo_1641

Alternate gene names: NA

Gene position: 2020963-2021337 (Clockwise)

Preceding gene: 93006464

Following gene: 93006468

Centisome position: 66.05

GC content: 40.8

Gene sequence:

>375_bases
ATGAGTATCCGCCAATCAGATGTATCGGCTCTACTTAATGGTTTGAATAAAAAAGCCATTGGATTCAATGATGTCATCAG
TTTTATTGATGATTTTTATCGTTATGCGCCAGCGCCTTTTGTGAATGGCATGGCACATAATGCTGCTGGTGAAAACGAAG
GCAGCGCCAAGATTTTTGGTTTTGCAAAGCATCACGGCTTAAATCAATTAGATACGCTAAAGTTGTTTGGTGAGCATTAC
CAAACAGTTCAAGCGACGCCTAAAGGAGTTGATCATCCCAATATTCGCAATTTTTTACATTGGGGCTGGCAAGGTTTTTT
AATGGAGAAGAATCCATTAACACTGCGCCCTAGCGTAGATACCAGCACGCTTTAA

Upstream 100 bases:

>100_bases
ATCGCTAACCTGTTAGCTTCATATCCAACTATCAATAATCATTAAGCTTGTATCAAGCATGCTAGTTTTGGCTTTTTAAC
AGCTTTGAGGTCATTTATTT

Downstream 100 bases:

>100_bases
TGGTTTATGATTGACGATTATAAAAAAGCCACACTATGATGATAGCGTGGCTTTTTTTATGCTTCATTTTTTATCAGTGC
ATTTAGATAGTAAGTCTATT

Product: hypothetical protein

Products: NA

Alternate protein names: Type III Effector HopPmaJ; Cytoplasmic Protein; HopJ Type III Effector Family Protein; HopJ1 Protein; Type III Effector; Hopj Type III Effector Protein

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MSIRQSDVSALLNGLNKKAIGFNDVISFIDDFYRYAPAPFVNGMAHNAAGENEGSAKIFGFAKHHGLNQLDTLKLFGEHY
QTVQATPKGVDHPNIRNFLHWGWQGFLMEKNPLTLRPSVDTSTL

Sequences:

>Translated_124_residues
MSIRQSDVSALLNGLNKKAIGFNDVISFIDDFYRYAPAPFVNGMAHNAAGENEGSAKIFGFAKHHGLNQLDTLKLFGEHY
QTVQATPKGVDHPNIRNFLHWGWQGFLMEKNPLTLRPSVDTSTL
>Mature_123_residues
SIRQSDVSALLNGLNKKAIGFNDVISFIDDFYRYAPAPFVNGMAHNAAGENEGSAKIFGFAKHHGLNQLDTLKLFGEHYQ
TVQATPKGVDHPNIRNFLHWGWQGFLMEKNPLTLRPSVDTSTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13816; Mature: 13685

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRQSDVSALLNGLNKKAIGFNDVISFIDDFYRYAPAPFVNGMAHNAAGENEGSAKIFG
CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCEEEEE
FAKHHGLNQLDTLKLFGEHYQTVQATPKGVDHPNIRNFLHWGWQGFLMEKNPLTLRPSVD
EHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCEEECCCCC
TSTL
CCCC
>Mature Secondary Structure 
SIRQSDVSALLNGLNKKAIGFNDVISFIDDFYRYAPAPFVNGMAHNAAGENEGSAKIFG
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCEEEEE
FAKHHGLNQLDTLKLFGEHYQTVQATPKGVDHPNIRNFLHWGWQGFLMEKNPLTLRPSVD
EHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCEEECCCCC
TSTL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA