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The map label for this gene is 93005267

Identifier: 93005267

GI number: 93005267

Start: 534746

End: 535357

Strand: Reverse

Name: 93005267

Synonym: Pcryo_0437

Alternate gene names: NA

Gene position: 535357-534746 (Counterclockwise)

Preceding gene: 93005268

Following gene: 93005266

Centisome position: 17.5

GC content: 46.73

Gene sequence:

>612_bases
ATGACGATGAACTGGCTAAAACAGCTGTCTACTGCTTGGCAAAAAAACCAATTACAGCGACCTGAACTGGCATCAATGTT
TACGGCACCTGTCGATGAGCAGTGGGTTGCGATTGATTGTGAGATGACCGGACTCAATCCAAAGAAGCATCACCTATTAT
CGGTAGCTGCCATTCATATCAATGGCGATAAGATTGATACAGGAAATGGGCTGCATCTGCTTTGCAGACCGCCTGTCATG
CCTGAGGGCGATACCATTGTCATTCATGGACTGCGCACCGCCGATGTTGAGCATGCGATGAGCTATGATGAGATGCTGGG
GTTACTATTGCCCTTTATTAGCAATCGGCCACTTGTGGGGTTTTGTCCGCAAATAGACGTCGGGTTCTTAAACCCTTTAG
TAAAGCATTATATGGGTACTCATTTGCCCAATGAGATTATCGATATCCGCCCCCTTTATAGCCGGCGTATGATGGGTCGT
AGCCAAGGGCTTTCAAGCCAAGCACAGCATTTGAATAGTATCTTGGCGCATTATAATATTCCTGAGCTTGGCACCCACGA
TGCTTATAATGACGCCATCATGACGGCAATGGCATTTTTGCATATGCGCTAA

Upstream 100 bases:

>100_bases
TAAAAGAGTGTTTGGCGGTAGTAAAAAGCTTTAAAGACCAGTTAAGCCGACATTATCAGCTTGAATTTGGTTAAGGTAAA
CCGGTTAGCCTTGGAGATAG

Downstream 100 bases:

>100_bases
TATAATGGCTAAAATGCATTATTTAGACAAGGCTTTAAGATAAAAGATTAAAATAAAAGCACGCTTACAACTACATGCTA
CAGCTACGCGAAAACAGTAA

Product: DNA polymerase III subunit epsilon

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Epsilon Subunit; Exonuclease RNAse T And DNA Polymerase III; Exonuclease; Exonuclease RNAase T And DNA Polymerase III; Exonuclease Superfamily; DNA Polymerase III PolC-Type; DNA Polymerase Exonuclease Activity

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MTMNWLKQLSTAWQKNQLQRPELASMFTAPVDEQWVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVM
PEGDTIVIHGLRTADVEHAMSYDEMLGLLLPFISNRPLVGFCPQIDVGFLNPLVKHYMGTHLPNEIIDIRPLYSRRMMGR
SQGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMTAMAFLHMR

Sequences:

>Translated_203_residues
MTMNWLKQLSTAWQKNQLQRPELASMFTAPVDEQWVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVM
PEGDTIVIHGLRTADVEHAMSYDEMLGLLLPFISNRPLVGFCPQIDVGFLNPLVKHYMGTHLPNEIIDIRPLYSRRMMGR
SQGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMTAMAFLHMR
>Mature_202_residues
TMNWLKQLSTAWQKNQLQRPELASMFTAPVDEQWVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMP
EGDTIVIHGLRTADVEHAMSYDEMLGLLLPFISNRPLVGFCPQIDVGFLNPLVKHYMGTHLPNEIIDIRPLYSRRMMGRS
QGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMTAMAFLHMR

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 22858; Mature: 22727

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMNWLKQLSTAWQKNQLQRPELASMFTAPVDEQWVAIDCEMTGLNPKKHHLLSVAAIHI
CCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCHHHEEEEEEEEE
NGDKIDTGNGLHLLCRPPVMPEGDTIVIHGLRTADVEHAMSYDEMLGLLLPFISNRPLVG
CCCEEECCCCEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FCPQIDVGFLNPLVKHYMGTHLPNEIIDIRPLYSRRMMGRSQGLSSQAQHLNSILAHYNI
ECCCCCHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
PELGTHDAYNDAIMTAMAFLHMR
CCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TMNWLKQLSTAWQKNQLQRPELASMFTAPVDEQWVAIDCEMTGLNPKKHHLLSVAAIHI
CHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCHHHEEEEEEEEE
NGDKIDTGNGLHLLCRPPVMPEGDTIVIHGLRTADVEHAMSYDEMLGLLLPFISNRPLVG
CCCEEECCCCEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FCPQIDVGFLNPLVKHYMGTHLPNEIIDIRPLYSRRMMGRSQGLSSQAQHLNSILAHYNI
ECCCCCHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
PELGTHDAYNDAIMTAMAFLHMR
CCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA