Click here to switch to the map view.

The map label for this gene is sdhD [H]

Identifier: 93004939

GI number: 93004939

Start: 124897

End: 125301

Strand: Direct

Name: sdhD [H]

Synonym: Pcryo_0108

Alternate gene names: 93004939

Gene position: 124897-125301 (Clockwise)

Preceding gene: 93004938

Following gene: 93004940

Centisome position: 4.08

GC content: 45.93

Gene sequence:

>405_bases
ATGAAAAACGATTCAGGAATAAAAAGCGCAACCAGTCTAACCGGCTCAGGCTCCCGTGATTGGATTGTCCAACGTATCAG
TGCGGTGGTCTTAGCAGTTTATAGTGTGGTGCTATTGGGCTTCTTTTTAACCCATGGCGATGTGAGCTACACGGAATGGT
CTAATTTTATGACCAGCTTACCGATGCGTCTATTTAGCTTAGTAGCAGTTCTAGCCCTTGCGGGTCATGCATGGATTGGC
ATGTGGACCGTATTCACAGACTATATCACTACCGGTAAATTGGGCGCGAGCGCAGCTGGCCTACGCTTGGTCTTACAGAC
ATTAATGATTATTGCCGTTTTTGTATTTTTATTCTGGGGCATCATGATTTTTTGGGGTAACGGCTTCGGTGTCGCTGCTG
TTTAA

Upstream 100 bases:

>100_bases
GCATGAATGAAGAGCTGAAATCTGGCCGTGCCGCCTCTATGATCAGCTTTGTAATTGCAGCGATATTAATAGTCGCGTCA
TTTGTATGGGTGATGTTCTA

Downstream 100 bases:

>100_bases
CGCTCAGATAGATATGCACATTTTAGTAAGTGGTTGAAGGCGGCTTAGATACCCAGTTATATACAATTACATCATCCATA
TCCGTGCTTTGAGTCGATGA

Product: succinate dehydrogenase hydrophobic membrane anchor subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKNDSGIKSATSLTGSGSRDWIVQRISAVVLAVYSVVLLGFFLTHGDVSYTEWSNFMTSLPMRLFSLVAVLALAGHAWIG
MWTVFTDYITTGKLGASAAGLRLVLQTLMIIAVFVFLFWGIMIFWGNGFGVAAV

Sequences:

>Translated_134_residues
MKNDSGIKSATSLTGSGSRDWIVQRISAVVLAVYSVVLLGFFLTHGDVSYTEWSNFMTSLPMRLFSLVAVLALAGHAWIG
MWTVFTDYITTGKLGASAAGLRLVLQTLMIIAVFVFLFWGIMIFWGNGFGVAAV
>Mature_134_residues
MKNDSGIKSATSLTGSGSRDWIVQRISAVVLAVYSVVLLGFFLTHGDVSYTEWSNFMTSLPMRLFSLVAVLALAGHAWIG
MWTVFTDYITTGKLGASAAGLRLVLQTLMIIAVFVFLFWGIMIFWGNGFGVAAV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=120, Percent_Identity=35.8333333333333, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14547; Mature: 14547

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNDSGIKSATSLTGSGSRDWIVQRISAVVLAVYSVVLLGFFLTHGDVSYTEWSNFMTSL
CCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
PMRLFSLVAVLALAGHAWIGMWTVFTDYITTGKLGASAAGLRLVLQTLMIIAVFVFLFWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IMIFWGNGFGVAAV
HHHHHCCCCCCCCC
>Mature Secondary Structure
MKNDSGIKSATSLTGSGSRDWIVQRISAVVLAVYSVVLLGFFLTHGDVSYTEWSNFMTSL
CCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
PMRLFSLVAVLALAGHAWIGMWTVFTDYITTGKLGASAAGLRLVLQTLMIIAVFVFLFWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IMIFWGNGFGVAAV
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]