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The map label for this gene is sdhC [H]

Identifier: 93004938

GI number: 93004938

Start: 124511

End: 124897

Strand: Direct

Name: sdhC [H]

Synonym: Pcryo_0107

Alternate gene names: 93004938

Gene position: 124511-124897 (Clockwise)

Preceding gene: 93004936

Following gene: 93004939

Centisome position: 4.07

GC content: 42.64

Gene sequence:

>387_bases
ATGCCCGCTGTGAAAAGCAACCGACCTATTGATCTGCCCCTCAGCCAAGTGATTAGTGTTAATCGATCACCGATTGCGAT
TGCTTCAATCTTGCATCGTATCTCTGGCATCATTTTATTTTTACTTATTCCAGTCATGCTGTGGTTATTGCAGAATTCTT
TGGCATCGCCTGAGAGTTTTGAAACCGTTTTTGACAATGTTTTAGTGCGCTTTTTGGCATGGATTTTCGTCGCCGCCATC
GCTTATCACTTTGTGATGGGTATGAAGCATTTATTTGCTGATATGGGCATGAATGAAGAGCTGAAATCTGGCCGTGCCGC
CTCTATGATCAGCTTTGTAATTGCAGCGATATTAATAGTCGCGTCATTTGTATGGGTGATGTTCTAA

Upstream 100 bases:

>100_bases
AGCTCTTCCTTCCTTACTTTATTCGTCTTGTGTGGTGCTCAGTGTATTTGGCAGACGATTGCTAAATCATAAGTAACTAC
CAGACATAACCGCAAAAAGG

Downstream 100 bases:

>100_bases
TGAAAAACGATTCAGGAATAAAAAGCGCAACCAGTCTAACCGGCTCAGGCTCCCGTGATTGGATTGTCCAACGTATCAGT
GCGGTGGTCTTAGCAGTTTA

Product: succinate dehydrogenase, cytochrome b subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MPAVKSNRPIDLPLSQVISVNRSPIAIASILHRISGIILFLLIPVMLWLLQNSLASPESFETVFDNVLVRFLAWIFVAAI
AYHFVMGMKHLFADMGMNEELKSGRAASMISFVIAAILIVASFVWVMF

Sequences:

>Translated_128_residues
MPAVKSNRPIDLPLSQVISVNRSPIAIASILHRISGIILFLLIPVMLWLLQNSLASPESFETVFDNVLVRFLAWIFVAAI
AYHFVMGMKHLFADMGMNEELKSGRAASMISFVIAAILIVASFVWVMF
>Mature_127_residues
PAVKSNRPIDLPLSQVISVNRSPIAIASILHRISGIILFLLIPVMLWLLQNSLASPESFETVFDNVLVRFLAWIFVAAIA
YHFVMGMKHLFADMGMNEELKSGRAASMISFVIAAILIVASFVWVMF

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=120, Percent_Identity=43.3333333333333, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14249; Mature: 14118

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAVKSNRPIDLPLSQVISVNRSPIAIASILHRISGIILFLLIPVMLWLLQNSLASPESF
CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ETVFDNVLVRFLAWIFVAAIAYHFVMGMKHLFADMGMNEELKSGRAASMISFVIAAILIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHH
ASFVWVMF
HHHHHHHC
>Mature Secondary Structure 
PAVKSNRPIDLPLSQVISVNRSPIAIASILHRISGIILFLLIPVMLWLLQNSLASPESF
CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ETVFDNVLVRFLAWIFVAAIAYHFVMGMKHLFADMGMNEELKSGRAASMISFVIAAILIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHH
ASFVWVMF
HHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]