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The map label for this gene is yhdX [H]

Identifier: 92112256

GI number: 92112256

Start: 143381

End: 144559

Strand: Direct

Name: yhdX [H]

Synonym: Csal_0121

Alternate gene names: 92112256

Gene position: 143381-144559 (Clockwise)

Preceding gene: 92112255

Following gene: 92112257

Centisome position: 3.88

GC content: 63.1

Gene sequence:

>1179_bases
ATGTCGCGTTCTCCTTCCGGCGATCGGGTTGCGTTGTGGCGTAATCCGACGTTTCGTGCCTTATTGCTGCAGGGCGTGTT
GCTGGCGGCGTTAGTGGCGTTGATCGCCTTCATCGTCGGCAACACGATGGCGAACCTCGAAGCCCGAGGCATCACCACCG
GCTTCGGGTTCCTCGATGAACGAGCGGGCTTTTCGATCCCGCAAACCTTGATCGAGTTCTCCGGTGACAGTACGTACGGC
CGCACCTTCCTGGTGGGGCTGCTGAATACGCTGCTGGTGTCGGCAATGGGCATCGTGGCGGCGACGATCATCGGGTTCGC
GGTCGGTATCGCCAGGTTGTCGCCGAACTGGTTGCTGGCTCGCCTGGCCGGTGCCTACGTCGAGATATTCCGCAACATTC
CGCTGCTGGTGCAGATCCTGTTCTGGTATTTCGCGGTGCTGCAGGCGCTGCCCAGTCCGCGTGACAGCCTGAGCCTGATG
GAAGTGGTCTTCATCAACGTGCGCGGCCTGGTCATCCCCGACCCGCAGCCGTTGAGCGGTTTCGCGGCCACGCCCTGGGC
CTTGCTGGTGGGCATCGTCGCGGCGATCGCATTGGGCATCTACGCGAAACGCCGCCAGGCGCGGACCGGCCAGGCCTTGC
CGATCTACTGGCTGGGCGCGGGGTTGATCATCGGAACGCCGCTGGCGGTATTCCTGCTGACGGGAGCGCCGCTCGAGTGG
TCGATTCCCGAGCTCAAGGGATTCAACTTCAGCGGCGGCGTCACGGTGATTCCCGAACTCGCCGCCCTCTGGTTGGCGCT
ATCGATCTACACCGCGTCCTTCATCGCGGAAATCGTGCGTTCCGGCATCTTGTCGGTGCCCAGCGGGCAGGTCGAGGCAT
CGCGCGCCCTGAGCCTGCCGGAGGCCATCACGCTGCGCAAGGTCGTGATCCCGCAGGCGATGCGCGTCATCGTGCCGCAA
CTGACGAGCCAATACCTGAACCTGATCAAGAACTCCTCGCTTGCCACGGCGATCGGGTATCCCGATCTGGTGGCCGTCTT
CGCGGGGACGACGCTCAACCAGACCGGCCAGGCCATCGAGATCGTGGCCATGACCATGGCCGTGTATCTGACGATCAGCC
TGATCGTATCGGCGCTGATGAATATGTATAACGCGCGCACGCTACTCAAGGAGCGTTGA

Upstream 100 bases:

>100_bases
GTCTTCAAGTACGCCGCGTGGGCGAGTATTTCGCCCACGCTCCCAGCACCCCGCATGATCTGCGGGGTGCCTTCTCGTGC
CAGTGTATTAGAGGATCGAC

Downstream 100 bases:

>100_bases
GATGTCCGGTGAATTCATGCGTGATGAGATGATCGAAGCGCGACGTCCGCCGGATGCGCGCCGTGGCATCTGGCGGTGGT
TCCATCGCAACTTGTTCAAT

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MSRSPSGDRVALWRNPTFRALLLQGVLLAALVALIAFIVGNTMANLEARGITTGFGFLDERAGFSIPQTLIEFSGDSTYG
RTFLVGLLNTLLVSAMGIVAATIIGFAVGIARLSPNWLLARLAGAYVEIFRNIPLLVQILFWYFAVLQALPSPRDSLSLM
EVVFINVRGLVIPDPQPLSGFAATPWALLVGIVAAIALGIYAKRRQARTGQALPIYWLGAGLIIGTPLAVFLLTGAPLEW
SIPELKGFNFSGGVTVIPELAALWLALSIYTASFIAEIVRSGILSVPSGQVEASRALSLPEAITLRKVVIPQAMRVIVPQ
LTSQYLNLIKNSSLATAIGYPDLVAVFAGTTLNQTGQAIEIVAMTMAVYLTISLIVSALMNMYNARTLLKER

Sequences:

>Translated_392_residues
MSRSPSGDRVALWRNPTFRALLLQGVLLAALVALIAFIVGNTMANLEARGITTGFGFLDERAGFSIPQTLIEFSGDSTYG
RTFLVGLLNTLLVSAMGIVAATIIGFAVGIARLSPNWLLARLAGAYVEIFRNIPLLVQILFWYFAVLQALPSPRDSLSLM
EVVFINVRGLVIPDPQPLSGFAATPWALLVGIVAAIALGIYAKRRQARTGQALPIYWLGAGLIIGTPLAVFLLTGAPLEW
SIPELKGFNFSGGVTVIPELAALWLALSIYTASFIAEIVRSGILSVPSGQVEASRALSLPEAITLRKVVIPQAMRVIVPQ
LTSQYLNLIKNSSLATAIGYPDLVAVFAGTTLNQTGQAIEIVAMTMAVYLTISLIVSALMNMYNARTLLKER
>Mature_391_residues
SRSPSGDRVALWRNPTFRALLLQGVLLAALVALIAFIVGNTMANLEARGITTGFGFLDERAGFSIPQTLIEFSGDSTYGR
TFLVGLLNTLLVSAMGIVAATIIGFAVGIARLSPNWLLARLAGAYVEIFRNIPLLVQILFWYFAVLQALPSPRDSLSLME
VVFINVRGLVIPDPQPLSGFAATPWALLVGIVAAIALGIYAKRRQARTGQALPIYWLGAGLIIGTPLAVFLLTGAPLEWS
IPELKGFNFSGGVTVIPELAALWLALSIYTASFIAEIVRSGILSVPSGQVEASRALSLPEAITLRKVVIPQAMRVIVPQL
TSQYLNLIKNSSLATAIGYPDLVAVFAGTTLNQTGQAIEIVAMTMAVYLTISLIVSALMNMYNARTLLKER

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=378, Percent_Identity=57.6719576719577, Blast_Score=419, Evalue=1e-118,
Organism=Escherichia coli, GI1786874, Length=128, Percent_Identity=39.84375, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788226, Length=185, Percent_Identity=29.1891891891892, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788645, Length=232, Percent_Identity=26.7241379310345, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786873, Length=123, Percent_Identity=31.7073170731707, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42013; Mature: 41882

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSPSGDRVALWRNPTFRALLLQGVLLAALVALIAFIVGNTMANLEARGITTGFGFLDE
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHH
RAGFSIPQTLIEFSGDSTYGRTFLVGLLNTLLVSAMGIVAATIIGFAVGIARLSPNWLLA
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RLAGAYVEIFRNIPLLVQILFWYFAVLQALPSPRDSLSLMEVVFINVRGLVIPDPQPLSG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCCCCC
FAATPWALLVGIVAAIALGIYAKRRQARTGQALPIYWLGAGLIIGTPLAVFLLTGAPLEW
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEECCHHHHHHHHHHHHHCCCCCCC
SIPELKGFNFSGGVTVIPELAALWLALSIYTASFIAEIVRSGILSVPSGQVEASRALSLP
CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCC
EAITLRKVVIPQAMRVIVPQLTSQYLNLIKNSSLATAIGYPDLVAVFAGTTLNQTGQAIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCCCCHHH
IVAMTMAVYLTISLIVSALMNMYNARTLLKER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRSPSGDRVALWRNPTFRALLLQGVLLAALVALIAFIVGNTMANLEARGITTGFGFLDE
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHH
RAGFSIPQTLIEFSGDSTYGRTFLVGLLNTLLVSAMGIVAATIIGFAVGIARLSPNWLLA
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RLAGAYVEIFRNIPLLVQILFWYFAVLQALPSPRDSLSLMEVVFINVRGLVIPDPQPLSG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCCCCC
FAATPWALLVGIVAAIALGIYAKRRQARTGQALPIYWLGAGLIIGTPLAVFLLTGAPLEW
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEECCHHHHHHHHHHHHHCCCCCCC
SIPELKGFNFSGGVTVIPELAALWLALSIYTASFIAEIVRSGILSVPSGQVEASRALSLP
CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCC
EAITLRKVVIPQAMRVIVPQLTSQYLNLIKNSSLATAIGYPDLVAVFAGTTLNQTGQAIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCCCCHHH
IVAMTMAVYLTISLIVSALMNMYNARTLLKER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]