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The map label for this gene is yhdY [H]

Identifier: 92112257

GI number: 92112257

Start: 144561

End: 145670

Strand: Direct

Name: yhdY [H]

Synonym: Csal_0122

Alternate gene names: 92112257

Gene position: 144561-145670 (Clockwise)

Preceding gene: 92112256

Following gene: 92112258

Centisome position: 3.91

GC content: 64.68

Gene sequence:

>1110_bases
ATGTCCGGTGAATTCATGCGTGATGAGATGATCGAAGCGCGACGTCCGCCGGATGCGCGCCGTGGCATCTGGCGGTGGTT
CCATCGCAACTTGTTCAATGGCCCCATCAACAGCGTGGTGACGGTGGTCACCATCGGGCTGCTGGCCTGGGGGCTCTGGC
CGTTCGTGCAGTGGGCACTGATCCAGGCCGACTGGATCGGCGACTCTCGCCAGGCCTGCAGCGGGGAGGGCGCTTGCTGG
GTCTTCATCAGCGCGCGTTTCGAATCGATCATCTACGGCTTCTACCCCGAAGCCGCCCGCTGGCGGGTGGATATCGTCTT
CGCCCTGATGGCGGGACTGCTGGCCTGGCTGGCGATCCCCAGGGTGCCGGGCAAGCGGTGGGCCGCGGTCATCGCCGTGA
TCGGCTTCCCGATAGCGGCCTACGTGCTGCTGCTCGGCGGTCACTTTGGCCTGATATACGTGCCGACCCGTGAATGGGGC
GGTCTGATGCTGACCCTGACCGTGGCCACCATCGGCATCGTCGGCTCGTTGCCGATCGGCATCGTACTGGCGCTGGGCCG
TCGCTCCAACCTGCCGTTCGTGCGTGCCGTGAGCGTGGTGTTCATCGAGTTCTGGCGGGGCGTGCCTCTCATCACCGTGC
TGTTCATGGCCTCGGTGATGCTGCCGTTGTTCGTGCCGACCCAGGTCGAGTTCGACAAGCTGCTGCGGGCGCTGGTGGGC
ATCATGCTGTTCTGGAGCGCCTACATGGCGGAGGTCGTCAGGGGCGGGCTGCAGGCCATTCCCAGCGGGCAGGATGAAGC
GGGCAAGGCGCTGGGACTGGGCTACTGGCAGCGCATGGGGCTGATCGTGCTGCCCCAGGCCCTGAAGCTGGTGATTCCCG
GCATCGTCAATACCTTCATCGCCCTGTTCAAGGACACCTCGCTGGTGCTGATCATCGGGCTGTTCGACCTGCTGGCGATC
ATTCGCGCGGGGCTGACCGACAGCGATTGGCTCGGGTTCGCCACCGAGGGGTACGTGTTCGCCGCGCTGGTGTTCTGGGT
GTTCTGTTTCAGCATGTCGCGCTATAGCCAGTACATCGAGAGACGCCTGCAGACAGGCCACACGAGCTGA

Upstream 100 bases:

>100_bases
ATCGTGGCCATGACCATGGCCGTGTATCTGACGATCAGCCTGATCGTATCGGCGCTGATGAATATGTATAACGCGCGCAC
GCTACTCAAGGAGCGTTGAG

Downstream 100 bases:

>100_bases
ACCACACCGATCGAATCGATATAACGATAACGCCAAGGAACTGCATCATGAGCCAAGCGACAGCGACCTCACACGGCGAC
ACGCCGATGATCGAGATGAC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSGEFMRDEMIEARRPPDARRGIWRWFHRNLFNGPINSVVTVVTIGLLAWGLWPFVQWALIQADWIGDSRQACSGEGACW
VFISARFESIIYGFYPEAARWRVDIVFALMAGLLAWLAIPRVPGKRWAAVIAVIGFPIAAYVLLLGGHFGLIYVPTREWG
GLMLTLTVATIGIVGSLPIGIVLALGRRSNLPFVRAVSVVFIEFWRGVPLITVLFMASVMLPLFVPTQVEFDKLLRALVG
IMLFWSAYMAEVVRGGLQAIPSGQDEAGKALGLGYWQRMGLIVLPQALKLVIPGIVNTFIALFKDTSLVLIIGLFDLLAI
IRAGLTDSDWLGFATEGYVFAALVFWVFCFSMSRYSQYIERRLQTGHTS

Sequences:

>Translated_369_residues
MSGEFMRDEMIEARRPPDARRGIWRWFHRNLFNGPINSVVTVVTIGLLAWGLWPFVQWALIQADWIGDSRQACSGEGACW
VFISARFESIIYGFYPEAARWRVDIVFALMAGLLAWLAIPRVPGKRWAAVIAVIGFPIAAYVLLLGGHFGLIYVPTREWG
GLMLTLTVATIGIVGSLPIGIVLALGRRSNLPFVRAVSVVFIEFWRGVPLITVLFMASVMLPLFVPTQVEFDKLLRALVG
IMLFWSAYMAEVVRGGLQAIPSGQDEAGKALGLGYWQRMGLIVLPQALKLVIPGIVNTFIALFKDTSLVLIIGLFDLLAI
IRAGLTDSDWLGFATEGYVFAALVFWVFCFSMSRYSQYIERRLQTGHTS
>Mature_368_residues
SGEFMRDEMIEARRPPDARRGIWRWFHRNLFNGPINSVVTVVTIGLLAWGLWPFVQWALIQADWIGDSRQACSGEGACWV
FISARFESIIYGFYPEAARWRVDIVFALMAGLLAWLAIPRVPGKRWAAVIAVIGFPIAAYVLLLGGHFGLIYVPTREWGG
LMLTLTVATIGIVGSLPIGIVLALGRRSNLPFVRAVSVVFIEFWRGVPLITVLFMASVMLPLFVPTQVEFDKLLRALVGI
MLFWSAYMAEVVRGGLQAIPSGQDEAGKALGLGYWQRMGLIVLPQALKLVIPGIVNTFIALFKDTSLVLIIGLFDLLAII
RAGLTDSDWLGFATEGYVFAALVFWVFCFSMSRYSQYIERRLQTGHTS

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=348, Percent_Identity=57.4712643678161, Blast_Score=391, Evalue=1e-110,
Organism=Escherichia coli, GI1786873, Length=207, Percent_Identity=32.8502415458937, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788226, Length=200, Percent_Identity=35.5, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=31.3725490196078, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1786874, Length=171, Percent_Identity=25.7309941520468, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI48994930, Length=125, Percent_Identity=30.4, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787087, Length=153, Percent_Identity=30.0653594771242, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=26.1467889908257, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788645, Length=172, Percent_Identity=27.3255813953488, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 41081; Mature: 40950

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGEFMRDEMIEARRPPDARRGIWRWFHRNLFNGPINSVVTVVTIGLLAWGLWPFVQWAL
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IQADWIGDSRQACSGEGACWVFISARFESIIYGFYPEAARWRVDIVFALMAGLLAWLAIP
HHHHCCCCCCHHCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
RVPGKRWAAVIAVIGFPIAAYVLLLGGHFGLIYVPTREWGGLMLTLTVATIGIVGSLPIG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCHHHH
IVLALGRRSNLPFVRAVSVVFIEFWRGVPLITVLFMASVMLPLFVPTQVEFDKLLRALVG
HHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IMLFWSAYMAEVVRGGLQAIPSGQDEAGKALGLGYWQRMGLIVLPQALKLVIPGIVNTFI
HHHHHHHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ALFKDTSLVLIIGLFDLLAIIRAGLTDSDWLGFATEGYVFAALVFWVFCFSMSRYSQYIE
HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRLQTGHTS
HHHHCCCCC
>Mature Secondary Structure 
SGEFMRDEMIEARRPPDARRGIWRWFHRNLFNGPINSVVTVVTIGLLAWGLWPFVQWAL
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IQADWIGDSRQACSGEGACWVFISARFESIIYGFYPEAARWRVDIVFALMAGLLAWLAIP
HHHHCCCCCCHHCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
RVPGKRWAAVIAVIGFPIAAYVLLLGGHFGLIYVPTREWGGLMLTLTVATIGIVGSLPIG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCHHHH
IVLALGRRSNLPFVRAVSVVFIEFWRGVPLITVLFMASVMLPLFVPTQVEFDKLLRALVG
HHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IMLFWSAYMAEVVRGGLQAIPSGQDEAGKALGLGYWQRMGLIVLPQALKLVIPGIVNTFI
HHHHHHHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ALFKDTSLVLIIGLFDLLAIIRAGLTDSDWLGFATEGYVFAALVFWVFCFSMSRYSQYIE
HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRLQTGHTS
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]