Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91789203
Identifier: 91789203
GI number: 91789203
Start: 3543974
End: 3544966
Strand: Direct
Name: 91789203
Synonym: Bpro_3347
Alternate gene names: NA
Gene position: 3543974-3544966 (Clockwise)
Preceding gene: 91789201
Following gene: 91789204
Centisome position: 68.15
GC content: 62.03
Gene sequence:
>993_bases ATGCCTTATCTCAATTTCGGGAGCCGCCTCGCCATGCTGCTAACCGCCATCGCGGTGTCCGTCAGCGCCCAGGCCCAGGC CCCGACCCAGAGCTTCCCCAGCAAGCCCGTGAAATGGATCGTGGGTTATCCCGCCGGGGGCGGCTCGGACTTCCTGGCGC GCACCGTGGCGGCCCAGATGTCTGTGCAACTGGGCCAACCGGTGATCATCGATAACCGGGCTGGCGCCGGCGCCATCATT GGCGCCGAAGCTACAGCCAGATCGCCGGGCGATGGCTACACCCTCTTCACCGCCGATAACGGTGTGCTGATCTACAACCC GGCGCTCTACAAGCGCCTGCCATACGATCCCGAGCGTGACTTCGCGCCCCTCGGCCTGATGGCGCGGACACCGCTGCTGA TTGTTGCCGCACCCAATGCCGGGATCCGGAATGCCCGGGAGCTGATGGACGTGCTCAAGAAAAATCCCGGCAAGCTGAAC TATGGTTCACCCGGAAACGGCAGCCCTCACCACCTGGCCATGGAACTCTTCAAAACGCGAACAGCGGCTTTCGCGGTGCA CGTTCCATACCGAGGGGCTGCGCCCGCCATGCAGGACGTCATGGGTGGCCAGATACCCCTGATGATTGTGGACACGTCGA CCGGCATGAGCGCCATCAAGGCCGGCAAGCTGGTACCGCTGGTGGCGTTTTCAGCAAAACGTGTTTCACAGCTGCCCGAC GTACCCACCATGATCGAGTTGGGCTACAAGGATGTTGAAGCCTATGCATGGCAGGGCATGGTGGTTCCCGCCAGCACGCC AAACGACATTCGGCAAAAGCTTTCGCAGGAAATGCAGGCGGCCGTCAATAACCCAGGCGTCCGCAAGAAACTCGAGGAGG CCGCCTGCGAATCCGTGCCCGGTGACGCAACCTTGATGTCGGTGTACACCCTCGCCGAAACCAAAAAATGGCACAAGCTG ATCCGCGAGCGCGGCATCACCCTCGAACAGTAG
Upstream 100 bases:
>100_bases GTTGATTGAATAATAAGCCAGATTGTCTTCTACTCGCATCGCGTACGAAACGCCTCTCTCAATCTCACTCAATATTTCAA ACGCCCTGCAGGAGACAACC
Downstream 100 bases:
>100_bases ACGGCCCCCTCACCTTATTCACGAAACGCAATGGAGACATCAATGACGCACAACAACTCTGCACTCAACCCTGCACTCAA CTCAGCGCTCAGTCTCATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MPYLNFGSRLAMLLTAIAVSVSAQAQAPTQSFPSKPVKWIVGYPAGGGSDFLARTVAAQMSVQLGQPVIIDNRAGAGAII GAEATARSPGDGYTLFTADNGVLIYNPALYKRLPYDPERDFAPLGLMARTPLLIVAAPNAGIRNARELMDVLKKNPGKLN YGSPGNGSPHHLAMELFKTRTAAFAVHVPYRGAAPAMQDVMGGQIPLMIVDTSTGMSAIKAGKLVPLVAFSAKRVSQLPD VPTMIELGYKDVEAYAWQGMVVPASTPNDIRQKLSQEMQAAVNNPGVRKKLEEAACESVPGDATLMSVYTLAETKKWHKL IRERGITLEQ
Sequences:
>Translated_330_residues MPYLNFGSRLAMLLTAIAVSVSAQAQAPTQSFPSKPVKWIVGYPAGGGSDFLARTVAAQMSVQLGQPVIIDNRAGAGAII GAEATARSPGDGYTLFTADNGVLIYNPALYKRLPYDPERDFAPLGLMARTPLLIVAAPNAGIRNARELMDVLKKNPGKLN YGSPGNGSPHHLAMELFKTRTAAFAVHVPYRGAAPAMQDVMGGQIPLMIVDTSTGMSAIKAGKLVPLVAFSAKRVSQLPD VPTMIELGYKDVEAYAWQGMVVPASTPNDIRQKLSQEMQAAVNNPGVRKKLEEAACESVPGDATLMSVYTLAETKKWHKL IRERGITLEQ >Mature_329_residues PYLNFGSRLAMLLTAIAVSVSAQAQAPTQSFPSKPVKWIVGYPAGGGSDFLARTVAAQMSVQLGQPVIIDNRAGAGAIIG AEATARSPGDGYTLFTADNGVLIYNPALYKRLPYDPERDFAPLGLMARTPLLIVAAPNAGIRNARELMDVLKKNPGKLNY GSPGNGSPHHLAMELFKTRTAAFAVHVPYRGAAPAMQDVMGGQIPLMIVDTSTGMSAIKAGKLVPLVAFSAKRVSQLPDV PTMIELGYKDVEAYAWQGMVVPASTPNDIRQKLSQEMQAAVNNPGVRKKLEEAACESVPGDATLMSVYTLAETKKWHKLI RERGITLEQ
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 35273; Mature: 35142
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYLNFGSRLAMLLTAIAVSVSAQAQAPTQSFPSKPVKWIVGYPAGGGSDFLARTVAAQM CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH SVQLGQPVIIDNRAGAGAIIGAEATARSPGDGYTLFTADNGVLIYNPALYKRLPYDPERD HHHCCCEEEEECCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEECHHHHHCCCCCCCCC FAPLGLMARTPLLIVAAPNAGIRNARELMDVLKKNPGKLNYGSPGNGSPHHLAMELFKTR CCCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH TAAFAVHVPYRGAAPAMQDVMGGQIPLMIVDTSTGMSAIKAGKLVPLVAFSAKRVSQLPD HEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHCCCCEEHHHHHHHHHHHCCC VPTMIELGYKDVEAYAWQGMVVPASTPNDIRQKLSQEMQAAVNNPGVRKKLEEAACESVP CCHHHHCCCHHHHHHEECCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC GDATLMSVYTLAETKKWHKLIRERGITLEQ CCHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PYLNFGSRLAMLLTAIAVSVSAQAQAPTQSFPSKPVKWIVGYPAGGGSDFLARTVAAQM CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH SVQLGQPVIIDNRAGAGAIIGAEATARSPGDGYTLFTADNGVLIYNPALYKRLPYDPERD HHHCCCEEEEECCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEECHHHHHCCCCCCCCC FAPLGLMARTPLLIVAAPNAGIRNARELMDVLKKNPGKLNYGSPGNGSPHHLAMELFKTR CCCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH TAAFAVHVPYRGAAPAMQDVMGGQIPLMIVDTSTGMSAIKAGKLVPLVAFSAKRVSQLPD HEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHCCCCEEHHHHHHHHHHHCCC VPTMIELGYKDVEAYAWQGMVVPASTPNDIRQKLSQEMQAAVNNPGVRKKLEEAACESVP CCHHHHCCCHHHHHHEECCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC GDATLMSVYTLAETKKWHKLIRERGITLEQ CCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]