Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91789017
Identifier: 91789017
GI number: 91789017
Start: 3333343
End: 3334839
Strand: Reverse
Name: 91789017
Synonym: Bpro_3157
Alternate gene names: NA
Gene position: 3334839-3333343 (Counterclockwise)
Preceding gene: 91789018
Following gene: 91789016
Centisome position: 64.13
GC content: 62.06
Gene sequence:
>1497_bases ATGAGCCGACCCATGTTTGACGAGATGAATGCAACGGAGTCCAGCATTCGTGACCATTACCAGGGCTATCAGCGCTGGCT GGCCAAACAGCCTCCCGAAGTGATGGAGGCGCGCCGCGCCGAAGCCGAGATGATTTTTCGCCGCGTCGGCATCACCTTCG CCGTGTATGGCGCCAAGGACGAGGACGGCGCAGGTACCGAGCGGCTGATTCCATTCGACCTGATCCCCCGGATCATTCCG GCCCAGGAATGGGCCAGCATGGAAAAGGGGCTGGTGCAGCGCGTCACGGCGCTGAACCGCTTCATCCACGACGTCTACCA CGGCCAGGAGATCATCAAGGCCGGCGTGATCCCGTCCGAGCAGATTTTCCAGAATTCCCAGTTTCGCCCGGAAATGATGG GCGTGGACGTGCCCGGCAACATCTATTCGCACATCAGCGGCATCGACATCGTGCGCGCGCCCAATGCACAGGGCGAGGGC GAGTACTACGTGCTCGAGGACAACCTGCGGGTCCCTAGCGGCGTGAGCTACATGCTGGAAGACCGCAAGATGATGATGCG GCTTTTCCCCGAACTCTTCAGCGAGAACCGCGTGGCGCCCGTGGCCCACTACCCCGATCTGTTGCTGGAAACACTGCGGG CCATGGCTCCGCCCGCCACGGCCGAGCCGACTGTCGTGGTGCTCACGCCCGGCATGTACAACTCGGCCTACTTTGAACAC GCCTTCCTGGCGCAGCAAATGGGCGTGGAACTGGTCGAAGGTCAGGATCTCTTTGTCAGGGACAACTTTGTCTATATGCG CACCACGCGCGGGCCGCGTCGGGTGGACGTGATCTACCGCCGCGTCGATGACGATTTCCTGGACCCGCTGGCTTTCCGTC CCAACTCCACGCTGGGCTGCGCGGGGCTGCTCAATGTCTACCGCAGCGGCAATGTGTCGCTGTGCAACGCCATCGGCACC GGCGTGGCAGACGACAAGTCGATCTATCCGTACGTGCCGAAAATGATCGAGTTCTACTTGGGCGAAAAACCCATCCTCAA GAACGTGCCAACCTACATGTGCCGCAACGCTGAAGACCTGCAGTACACCCTGGCCAATCTCAAGGATCTGGTCGTCAAGG AGGTTCATGGCGCGGGGGGCTACGGCATGCTGGTGGGGCCGGCCGCCACTCAGGCCGAAATCGAGGACTTCCGCCAGGCG CTGCTGGCCAACCCCTCGGGCTATATTGCCCAGCCCACACTGAGCCTGTCGACCTGCCCCACCTATGTCGAAAGCGGCGT GGCGCCGCGACACATCGACCTGCGGCCCTTTGTGCTGAGCGGCAAGGACGTGCAGATGGTGCCGGGCGGCCTCACCCGCG TGGCGCTGAAAGACGGCTCGCTGGTGGTGAACTCTTCACAGGGCGGCGGCACGAAGGACACCTGGATATTGCAGGAAGGC CATGGCATGCCCATGCAGACGCAATCACAGTCACAGTCAACGGTTGGAGGTGTTTGA
Upstream 100 bases:
>100_bases AAGAAAACCGCGACGTGATACCCGATTCGCCAATCTGGCGCATAACTTGCTAAGCTAGTCATCACTACGCCATGCGCAAA CCTTGCTGGAGACCAAGCCA
Downstream 100 bases:
>100_bases TCATGCTATCAAGAACTGCTGATCACCTTTTCTGGATGTCGCGCTACACCGAGCGCGCCGAGAATACCGCGCGCATGCTT GACGTGAACTACCAGACCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 498; Mature: 497
Protein sequence:
>498_residues MSRPMFDEMNATESSIRDHYQGYQRWLAKQPPEVMEARRAEAEMIFRRVGITFAVYGAKDEDGAGTERLIPFDLIPRIIP AQEWASMEKGLVQRVTALNRFIHDVYHGQEIIKAGVIPSEQIFQNSQFRPEMMGVDVPGNIYSHISGIDIVRAPNAQGEG EYYVLEDNLRVPSGVSYMLEDRKMMMRLFPELFSENRVAPVAHYPDLLLETLRAMAPPATAEPTVVVLTPGMYNSAYFEH AFLAQQMGVELVEGQDLFVRDNFVYMRTTRGPRRVDVIYRRVDDDFLDPLAFRPNSTLGCAGLLNVYRSGNVSLCNAIGT GVADDKSIYPYVPKMIEFYLGEKPILKNVPTYMCRNAEDLQYTLANLKDLVVKEVHGAGGYGMLVGPAATQAEIEDFRQA LLANPSGYIAQPTLSLSTCPTYVESGVAPRHIDLRPFVLSGKDVQMVPGGLTRVALKDGSLVVNSSQGGGTKDTWILQEG HGMPMQTQSQSQSTVGGV
Sequences:
>Translated_498_residues MSRPMFDEMNATESSIRDHYQGYQRWLAKQPPEVMEARRAEAEMIFRRVGITFAVYGAKDEDGAGTERLIPFDLIPRIIP AQEWASMEKGLVQRVTALNRFIHDVYHGQEIIKAGVIPSEQIFQNSQFRPEMMGVDVPGNIYSHISGIDIVRAPNAQGEG EYYVLEDNLRVPSGVSYMLEDRKMMMRLFPELFSENRVAPVAHYPDLLLETLRAMAPPATAEPTVVVLTPGMYNSAYFEH AFLAQQMGVELVEGQDLFVRDNFVYMRTTRGPRRVDVIYRRVDDDFLDPLAFRPNSTLGCAGLLNVYRSGNVSLCNAIGT GVADDKSIYPYVPKMIEFYLGEKPILKNVPTYMCRNAEDLQYTLANLKDLVVKEVHGAGGYGMLVGPAATQAEIEDFRQA LLANPSGYIAQPTLSLSTCPTYVESGVAPRHIDLRPFVLSGKDVQMVPGGLTRVALKDGSLVVNSSQGGGTKDTWILQEG HGMPMQTQSQSQSTVGGV >Mature_497_residues SRPMFDEMNATESSIRDHYQGYQRWLAKQPPEVMEARRAEAEMIFRRVGITFAVYGAKDEDGAGTERLIPFDLIPRIIPA QEWASMEKGLVQRVTALNRFIHDVYHGQEIIKAGVIPSEQIFQNSQFRPEMMGVDVPGNIYSHISGIDIVRAPNAQGEGE YYVLEDNLRVPSGVSYMLEDRKMMMRLFPELFSENRVAPVAHYPDLLLETLRAMAPPATAEPTVVVLTPGMYNSAYFEHA FLAQQMGVELVEGQDLFVRDNFVYMRTTRGPRRVDVIYRRVDDDFLDPLAFRPNSTLGCAGLLNVYRSGNVSLCNAIGTG VADDKSIYPYVPKMIEFYLGEKPILKNVPTYMCRNAEDLQYTLANLKDLVVKEVHGAGGYGMLVGPAATQAEIEDFRQAL LANPSGYIAQPTLSLSTCPTYVESGVAPRHIDLRPFVLSGKDVQMVPGGLTRVALKDGSLVVNSSQGGGTKDTWILQEGH GMPMQTQSQSQSTVGGV
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis RV2411c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007297 - InterPro: IPR007302 - InterPro: IPR016450 [H]
Pfam domain/function: PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 55319; Mature: 55188
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPMFDEMNATESSIRDHYQGYQRWLAKQPPEVMEARRAEAEMIFRRVGITFAVYGAKD CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCC EDGAGTERLIPFDLIPRIIPAQEWASMEKGLVQRVTALNRFIHDVYHGQEIIKAGVIPSE CCCCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH QIFQNSQFRPEMMGVDVPGNIYSHISGIDIVRAPNAQGEGEYYVLEDNLRVPSGVSYMLE HHHCCCCCCCHHEECCCCCHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCHHHHHH DRKMMMRLFPELFSENRVAPVAHYPDLLLETLRAMAPPATAEPTVVVLTPGMYNSAYFEH HHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH AFLAQQMGVELVEGQDLFVRDNFVYMRTTRGPRRVDVIYRRVDDDFLDPLAFRPNSTLGC HHHHHHHCCEEECCCEEEEECCEEEEEECCCCHHHHHHHHHHCHHHHCCCCCCCCCCCCH AGLLNVYRSGNVSLCNAIGTGVADDKSIYPYVPKMIEFYLGEKPILKNVPTYMCRNAEDL HHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHHCCCHHH QYTLANLKDLVVKEVHGAGGYGMLVGPAATQAEIEDFRQALLANPSGYIAQPTLSLSTCP HHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEECCCCCHHCCH TYVESGVAPRHIDLRPFVLSGKDVQMVPGGLTRVALKDGSLVVNSSQGGGTKDTWILQEG HHHHCCCCCCEECCCEEEECCCCEEECCCCCEEEEEECCCEEEECCCCCCCCCEEEEECC HGMPMQTQSQSQSTVGGV CCCCCCCCCCCCHHCCCC >Mature Secondary Structure SRPMFDEMNATESSIRDHYQGYQRWLAKQPPEVMEARRAEAEMIFRRVGITFAVYGAKD CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCC EDGAGTERLIPFDLIPRIIPAQEWASMEKGLVQRVTALNRFIHDVYHGQEIIKAGVIPSE CCCCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH QIFQNSQFRPEMMGVDVPGNIYSHISGIDIVRAPNAQGEGEYYVLEDNLRVPSGVSYMLE HHHCCCCCCCHHEECCCCCHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCHHHHHH DRKMMMRLFPELFSENRVAPVAHYPDLLLETLRAMAPPATAEPTVVVLTPGMYNSAYFEH HHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH AFLAQQMGVELVEGQDLFVRDNFVYMRTTRGPRRVDVIYRRVDDDFLDPLAFRPNSTLGC HHHHHHHCCEEECCCEEEEECCEEEEEECCCCHHHHHHHHHHCHHHHCCCCCCCCCCCCH AGLLNVYRSGNVSLCNAIGTGVADDKSIYPYVPKMIEFYLGEKPILKNVPTYMCRNAEDL HHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHHCCCHHH QYTLANLKDLVVKEVHGAGGYGMLVGPAATQAEIEDFRQALLANPSGYIAQPTLSLSTCP HHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEECCCCCHHCCH TYVESGVAPRHIDLRPFVLSGKDVQMVPGGLTRVALKDGSLVVNSSQGGGTKDTWILQEG HHHHCCCCCCEECCCEEEECCCCEEECCCCCEEEEEECCCEEEECCCCCCCCCEEEEECC HGMPMQTQSQSQSTVGGV CCCCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1368738; 8590279; 8905231 [H]