Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is comA [H]
Identifier: 91789018
GI number: 91789018
Start: 3334978
End: 3337560
Strand: Reverse
Name: comA [H]
Synonym: Bpro_3158
Alternate gene names: 91789018
Gene position: 3337560-3334978 (Counterclockwise)
Preceding gene: 91789023
Following gene: 91789017
Centisome position: 64.18
GC content: 68.22
Gene sequence:
>2583_bases GTGGGCGACCGTGTATCAGCCAGACCATGGGCGGCCTCCATGGGGCCTGGCCTTGTCTTTGGCGGCTTCATCACCGGGGT AGCCTTGCAGCTGCAGCAGCCCGGTTTGTGGCCGGGCAGCCTGTATCCCGCATTGGCGGTGCTCGCGGCACTGGCGGGGG TGGTAATGGGCGCTTGGTGGCTCATGGCTGGCCGCAGCTCGCCTCTGACCCTGAACGTCAGGGGTTTTCGCGGTGTGGGT GTGGTGGCCCTGGCGCTCGCGGCCCTGCTGGGCTTTGGCCTGACGGGGTGGCGGGCCACGGTCTTTCAGTCGGCGGCACT CGACCCCGCGCTGGAGGGTCGCGATATTGCCGTGACGGGTGTGGTGCTGGCCATGCCGCAACCCGCCGAAGACGGCCTGC GCTTTCGCCTGGGTATTGAATCGGCCCGCCTGAATGGGCAAACAGTCACCTTGCCGCGGCATATCCTGCTTGGCTGGTAC AGCGGCTTCGGCATGCGGGACGGCAGGGCATCGCCGGCCGAAAGCGCCGATCCGTCTGACCTTGCGCTGGAGCTGCAGCG CCAGCCGCAGGACTTGCGCGCGGGCGAGCGCTGGCAGATGACGGTGCGGCTGAAGGTCCCGCACGGCAACAGCAACCCGC ACGGATTCGACTACGAACTCTGGCTGTGGGAGCAGGGCATTCAGGCCACCGGCTATGTGCGCGCCGGGCTGAACGATGCG CCGCCCCGACGGCTGTCCGGCGGCTGGGATCATCCGGTAGAGAGCGCCCGGCAGTCGGTGCGTGAAGCGATTTTCCAGCG CGTTGGCAACCGCCAGCTGGCCGGTGTAGTGGCCGCCCTGGTGGTGGGCGACCAGAACGCCATTGATCGCGCTGACTGGG ATGTCTTTCGCGCCACCGGTGTCGCTCACCTGATGAGTATTTCGGGCCTGCACATCACCATGTTCGCCTGGCTCGCCTCC CTGCTGTTGAGCGGCCTGTGGCGGCGCTCTGCCGGGTTGACGCCCCGGCTTTGCCTGGCGCTGCCGGCCGTCAGCGCCGG AGCCTGGGGCGGCCTGTTGCTCGCGGTCCTGTACGCGCTGTTTTCAGGCTGGGGCGTGCCGGCGCAGAGAACCATCTGGA TGCTGGCGACGGTGGTGTTGCTGCGGCACAGCGGCAAGCAGTGGCCCTGGCTGCAAACCTGGCTGCTGGCCATGGCGGTG GTGGTCACGCTGGACCCCTGGGCGCTGATGCAGGCGGGTTTCTGGCTGTCGTTTGTTGCGGTGGGCGTGCTGTTTGCTGC AAATCCAGGAGCGTCTGGTGCCCGTGATTCGGCGGGTGATGGCCCGCTTCTCTCAGGAAGTCCGGTGAAGCAAGGGTGGG TGCCGCGGCTGTTGGCAAAACCGGCTGCTGCCTTGCTGCGCGCCGCCCGGGAGCAATGGGTGGTCACGCTGGCGCTCACG CCCCTGTCGCTGCTGCTGTTCAACCAGGTGTCGCTGGTCGGCCTGCTGGCCAACGCGGTGGCCATTCCCTGGGTGACGCT GGTTGTGACGCCGCTGGCCATGCTGGGCGTGCTGTGGGCGCCGGTGTGGGACGCGGCGGCGTGGGCCGTGGGCCTGCTGG CGGTCTTTTTGCAGTGGCTGGCCGCCTGGCCGCTGGCCTCTGTCAGCGTGGCCGCGGCGCCGCCGTGGTGCGCTGCCTTT GGTGTGCTGGGGGGTGTTTTGCTGGCGCTGCGCCTGCCCTGGCACTGGCGCGCTCTGGGCGTGCCGCTACTGCTCCCCGT ACTGCTGTGGCAACCGGTGCGGGTCGCGCCGGGGCAGTTTGAGTTGCTGGCAGCGGACATCGGGCAGGGCAATGCCGTAC TGGTGCGCACGGCCACCCATTCGCTGCTGTATGACACCGGCCCGCGCTTTTCGCGCGAGAGCGATGCCGGGCACCGCGTG CTGGTGCCGCTGCTGCGCGCCCTTGGTGAGCGACTGGACATGCTGATGCTGAGCCACCGGGATATCGACCATATTGGCGG CGCGCGGGCCGTGCTGGCCATGCAGCCGCAAGCCAGCCTGCTCAGCTCGATTGAGGACAGCCACGAGTTGCAGGCTGTGC GCAAATCGGCCCGCTGCACGGCGGGCCTGCGCTGGGTCTGGGATGCGGTGACTTTTGAAGTGCTGCACCCGGTGGCCGCC GACTACGAGGCGGCGAACAAATCCAATGCCATGAGCTGCGTGCTGCGTATCTCCAACGGCGCGCAGACCGCCTTGCTGGC GGGCGACATCGAGTCCGCCCAGGAGCTCCGGCTGGCCACCAGCGGTGACCCGCCTGGCCTGAAGGCCGACTTTTTGCTGG TGCCGCACCACGGCAGCAAGACCTCGTCGAGTGCTGTGTTCCTCGATGCCGTCCAGCCCCGGCTGGCGCTGGTGCAGGCA GGCTACCGCAACCGGTTTGGCCATCCGGTGGACTTGGTGGTGGCGCGCTACAACGAACGCGGCATCAGGCTGCTCAGGTC GCCGCAGTGTGGGGCAGCCGTCTGGCAGAGCCTGAAACCGGCGGACATCACGTGCCAGCGGCAGGCAGGCCAGCACTACT GGCATCATGTGCCTGAGCCATAA
Upstream 100 bases:
>100_bases AGGCTTTGTCGGCTTTTTGCGTCGTCCGGCCGTTGAACACGCAGCCATTGCATCAAACAACATTGAACAAAGCAATCAAT AACAAGTGGGGGAGGAGGCT
Downstream 100 bases:
>100_bases GGAAAAGGAGAAAAAAAAGGATTCCACCGGAAGTGAAAAAGAAAACCGCGACGTGATACCCGATTCGCCAATCTGGCGCA TAACTTGCTAAGCTAGTCAT
Product: DNA internalization-like protein competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 860; Mature: 859
Protein sequence:
>860_residues MGDRVSARPWAASMGPGLVFGGFITGVALQLQQPGLWPGSLYPALAVLAALAGVVMGAWWLMAGRSSPLTLNVRGFRGVG VVALALAALLGFGLTGWRATVFQSAALDPALEGRDIAVTGVVLAMPQPAEDGLRFRLGIESARLNGQTVTLPRHILLGWY SGFGMRDGRASPAESADPSDLALELQRQPQDLRAGERWQMTVRLKVPHGNSNPHGFDYELWLWEQGIQATGYVRAGLNDA PPRRLSGGWDHPVESARQSVREAIFQRVGNRQLAGVVAALVVGDQNAIDRADWDVFRATGVAHLMSISGLHITMFAWLAS LLLSGLWRRSAGLTPRLCLALPAVSAGAWGGLLLAVLYALFSGWGVPAQRTIWMLATVVLLRHSGKQWPWLQTWLLAMAV VVTLDPWALMQAGFWLSFVAVGVLFAANPGASGARDSAGDGPLLSGSPVKQGWVPRLLAKPAAALLRAAREQWVVTLALT PLSLLLFNQVSLVGLLANAVAIPWVTLVVTPLAMLGVLWAPVWDAAAWAVGLLAVFLQWLAAWPLASVSVAAAPPWCAAF GVLGGVLLALRLPWHWRALGVPLLLPVLLWQPVRVAPGQFELLAADIGQGNAVLVRTATHSLLYDTGPRFSRESDAGHRV LVPLLRALGERLDMLMLSHRDIDHIGGARAVLAMQPQASLLSSIEDSHELQAVRKSARCTAGLRWVWDAVTFEVLHPVAA DYEAANKSNAMSCVLRISNGAQTALLAGDIESAQELRLATSGDPPGLKADFLLVPHHGSKTSSSAVFLDAVQPRLALVQA GYRNRFGHPVDLVVARYNERGIRLLRSPQCGAAVWQSLKPADITCQRQAGQHYWHHVPEP
Sequences:
>Translated_860_residues MGDRVSARPWAASMGPGLVFGGFITGVALQLQQPGLWPGSLYPALAVLAALAGVVMGAWWLMAGRSSPLTLNVRGFRGVG VVALALAALLGFGLTGWRATVFQSAALDPALEGRDIAVTGVVLAMPQPAEDGLRFRLGIESARLNGQTVTLPRHILLGWY SGFGMRDGRASPAESADPSDLALELQRQPQDLRAGERWQMTVRLKVPHGNSNPHGFDYELWLWEQGIQATGYVRAGLNDA PPRRLSGGWDHPVESARQSVREAIFQRVGNRQLAGVVAALVVGDQNAIDRADWDVFRATGVAHLMSISGLHITMFAWLAS LLLSGLWRRSAGLTPRLCLALPAVSAGAWGGLLLAVLYALFSGWGVPAQRTIWMLATVVLLRHSGKQWPWLQTWLLAMAV VVTLDPWALMQAGFWLSFVAVGVLFAANPGASGARDSAGDGPLLSGSPVKQGWVPRLLAKPAAALLRAAREQWVVTLALT PLSLLLFNQVSLVGLLANAVAIPWVTLVVTPLAMLGVLWAPVWDAAAWAVGLLAVFLQWLAAWPLASVSVAAAPPWCAAF GVLGGVLLALRLPWHWRALGVPLLLPVLLWQPVRVAPGQFELLAADIGQGNAVLVRTATHSLLYDTGPRFSRESDAGHRV LVPLLRALGERLDMLMLSHRDIDHIGGARAVLAMQPQASLLSSIEDSHELQAVRKSARCTAGLRWVWDAVTFEVLHPVAA DYEAANKSNAMSCVLRISNGAQTALLAGDIESAQELRLATSGDPPGLKADFLLVPHHGSKTSSSAVFLDAVQPRLALVQA GYRNRFGHPVDLVVARYNERGIRLLRSPQCGAAVWQSLKPADITCQRQAGQHYWHHVPEP >Mature_859_residues GDRVSARPWAASMGPGLVFGGFITGVALQLQQPGLWPGSLYPALAVLAALAGVVMGAWWLMAGRSSPLTLNVRGFRGVGV VALALAALLGFGLTGWRATVFQSAALDPALEGRDIAVTGVVLAMPQPAEDGLRFRLGIESARLNGQTVTLPRHILLGWYS GFGMRDGRASPAESADPSDLALELQRQPQDLRAGERWQMTVRLKVPHGNSNPHGFDYELWLWEQGIQATGYVRAGLNDAP PRRLSGGWDHPVESARQSVREAIFQRVGNRQLAGVVAALVVGDQNAIDRADWDVFRATGVAHLMSISGLHITMFAWLASL LLSGLWRRSAGLTPRLCLALPAVSAGAWGGLLLAVLYALFSGWGVPAQRTIWMLATVVLLRHSGKQWPWLQTWLLAMAVV VTLDPWALMQAGFWLSFVAVGVLFAANPGASGARDSAGDGPLLSGSPVKQGWVPRLLAKPAAALLRAAREQWVVTLALTP LSLLLFNQVSLVGLLANAVAIPWVTLVVTPLAMLGVLWAPVWDAAAWAVGLLAVFLQWLAAWPLASVSVAAAPPWCAAFG VLGGVLLALRLPWHWRALGVPLLLPVLLWQPVRVAPGQFELLAADIGQGNAVLVRTATHSLLYDTGPRFSRESDAGHRVL VPLLRALGERLDMLMLSHRDIDHIGGARAVLAMQPQASLLSSIEDSHELQAVRKSARCTAGLRWVWDAVTFEVLHPVAAD YEAANKSNAMSCVLRISNGAQTALLAGDIESAQELRLATSGDPPGLKADFLLVPHHGSKTSSSAVFLDAVQPRLALVQAG YRNRFGHPVDLVVARYNERGIRLLRSPQCGAAVWQSLKPADITCQRQAGQHYWHHVPEP
Specific function: Essential for natural transformation. Could be a transporter involved in DNA uptake [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, H.influenzae REC2, and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=671, Percent_Identity=28.3159463487332, Blast_Score=201, Evalue=2e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 92372; Mature: 92241
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDRVSARPWAASMGPGLVFGGFITGVALQLQQPGLWPGSLYPALAVLAALAGVVMGAWW CCCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH LMAGRSSPLTLNVRGFRGVGVVALALAALLGFGLTGWRATVFQSAALDPALEGRDIAVTG HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEE VVLAMPQPAEDGLRFRLGIESARLNGQTVTLPRHILLGWYSGFGMRDGRASPAESADPSD EEEECCCCCCCCCEEEEECHHHHCCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCHH LALELQRQPQDLRAGERWQMTVRLKVPHGNSNPHGFDYELWLWEQGIQATGYVRAGLNDA HHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCC PPRRLSGGWDHPVESARQSVREAIFQRVGNRQLAGVVAALVVGDQNAIDRADWDVFRATG CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH VAHLMSISGLHITMFAWLASLLLSGLWRRSAGLTPRLCLALPAVSAGAWGGLLLAVLYAL HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH FSGWGVPAQRTIWMLATVVLLRHSGKQWPWLQTWLLAMAVVVTLDPWALMQAGFWLSFVA HCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH VGVLFAANPGASGARDSAGDGPLLSGSPVKQGWVPRLLAKPAAALLRAAREQWVVTLALT HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHH PLSLLLFNQVSLVGLLANAVAIPWVTLVVTPLAMLGVLWAPVWDAAAWAVGLLAVFLQWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAWPLASVSVAAAPPWCAAFGVLGGVLLALRLPWHWRALGVPLLLPVLLWQPVRVAPGQF HHCCHHHCEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHCCCCCCCCCCE ELLAADIGQGNAVLVRTATHSLLYDTGPRFSRESDAGHRVLVPLLRALGERLDMLMLSHR EEEEEECCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC DIDHIGGARAVLAMQPQASLLSSIEDSHELQAVRKSARCTAGLRWVWDAVTFEVLHPVAA CHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH DYEAANKSNAMSCVLRISNGAQTALLAGDIESAQELRLATSGDPPGLKADFLLVPHHGSK CHHHCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHEEECCCCCCCCCEEEEEECCCCCC TSSSAVFLDAVQPRLALVQAGYRNRFGHPVDLVVARYNERGIRLLRSPQCGAAVWQSLKP CCCCEEEEEHHCHHHHHHHCCHHHCCCCCCEEEEEECCCCCHHEECCCCCCHHHHHCCCC ADITCQRQAGQHYWHHVPEP CCCEEHHHCCCHHCCCCCCC >Mature Secondary Structure GDRVSARPWAASMGPGLVFGGFITGVALQLQQPGLWPGSLYPALAVLAALAGVVMGAWW CCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH LMAGRSSPLTLNVRGFRGVGVVALALAALLGFGLTGWRATVFQSAALDPALEGRDIAVTG HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEE VVLAMPQPAEDGLRFRLGIESARLNGQTVTLPRHILLGWYSGFGMRDGRASPAESADPSD EEEECCCCCCCCCEEEEECHHHHCCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCHH LALELQRQPQDLRAGERWQMTVRLKVPHGNSNPHGFDYELWLWEQGIQATGYVRAGLNDA HHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCC PPRRLSGGWDHPVESARQSVREAIFQRVGNRQLAGVVAALVVGDQNAIDRADWDVFRATG CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH VAHLMSISGLHITMFAWLASLLLSGLWRRSAGLTPRLCLALPAVSAGAWGGLLLAVLYAL HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH FSGWGVPAQRTIWMLATVVLLRHSGKQWPWLQTWLLAMAVVVTLDPWALMQAGFWLSFVA HCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH VGVLFAANPGASGARDSAGDGPLLSGSPVKQGWVPRLLAKPAAALLRAAREQWVVTLALT HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHH PLSLLLFNQVSLVGLLANAVAIPWVTLVVTPLAMLGVLWAPVWDAAAWAVGLLAVFLQWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAWPLASVSVAAAPPWCAAFGVLGGVLLALRLPWHWRALGVPLLLPVLLWQPVRVAPGQF HHCCHHHCEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHCCCCCCCCCCE ELLAADIGQGNAVLVRTATHSLLYDTGPRFSRESDAGHRVLVPLLRALGERLDMLMLSHR EEEEEECCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC DIDHIGGARAVLAMQPQASLLSSIEDSHELQAVRKSARCTAGLRWVWDAVTFEVLHPVAA CHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH DYEAANKSNAMSCVLRISNGAQTALLAGDIESAQELRLATSGDPPGLKADFLLVPHHGSK CHHHCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHEEECCCCCCCCCEEEEEECCCCCC TSSSAVFLDAVQPRLALVQAGYRNRFGHPVDLVVARYNERGIRLLRSPQCGAAVWQSLKP CCCCEEEEEHHCHHHHHHHCCHHHCCCCCCEEEEEECCCCCHHEECCCCCCHHHHHCCCC ADITCQRQAGQHYWHHVPEP CCCEEHHHCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934834; 8830266 [H]