Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is braF [H]
Identifier: 91788943
GI number: 91788943
Start: 3251070
End: 3251834
Strand: Reverse
Name: braF [H]
Synonym: Bpro_3083
Alternate gene names: 91788943
Gene position: 3251834-3251070 (Counterclockwise)
Preceding gene: 91788944
Following gene: 91788942
Centisome position: 62.53
GC content: 66.8
Gene sequence:
>765_bases ATGCTGCAGGTTCAGCAACTGGTCAAGCACTTTGGCGGCATCAAGGCGGTCGATGGCGTGAGCTTTGAGGTCTCGGCAGG CGAGTGCGTGGCCTTGATCGGGCCCAACGGGGCGGGCAAGTCGACCTGCTTTGCCTGCATTGCGGGCCAATACCCGCTCA CCGGCGGCCACATTGTGTGGAATGGGCAGGCGCTGGACGGACTGGCCCCCGCAGCCCGTCTGGCGCGCGGTGTAGCCCGC ACGTTTCAGGTCGCGCAAGTCTTTGAAGCCCTGACAGCGCTACAAAATGTGCAGCTGGCGGCCCAGGCGGGTAAAGGGGC GCATTCGATTTCCGCGTTCAAGCGCCTGGATGCGCTGTGCCGCGAGGAGTCGCAGGCGCTGCTGGACCAGACGGGCCTGG GCGAGTTGGCTGGCAAGCAGGCGTTGAGCCTGCCCTACGGTGCCAAAAAGCGGCTGGAGCTGGCCGTGGCGCTGGCCGCC CGCCCACGGCTGCTGCTGCTCGATGAACCGGCTGCCGGCCTGGCCGAGGAAGAGCGGGAGGGCCTGATGCACCTGGTCAA AGGCCTGGCCGGTCAAGCGGGTCAGGCAGGGGAGGCGATGGCTGTGCTCTACACCGAGCACAACATGGATGCGGTCGCGG GCGTGGCCGACCGCGTGCTGGTACTGATTGAGGGCCGGCTGGCGGCGCAGGGTTCGTTTGAGGAGATTTCCCGCGACAGC ACGGTGCGCAGGCGCTATCTGGGTGAAGGCGCAGCTCATGCCTGA
Upstream 100 bases:
>100_bases TCTTCATCATGCTGGTGATGGTGGCTTCACCGTCGGGTTTGCTGGGCCTGCTGGGCAGCCGCACCCGCCCGGCCGAGCGG GCAACCGGGAGGGCGGGCTG
Downstream 100 bases:
>100_bases TATGCGCATGAACGTGCAAATGGACGTGCCCCTGGACGTGGAGGGGCTGAATGCCTTTTATGGCCCGGCCCAGGCGCTTT TCGGCATTTCCCTGCAGGTG
Product: ABC transporter-like protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MLQVQQLVKHFGGIKAVDGVSFEVSAGECVALIGPNGAGKSTCFACIAGQYPLTGGHIVWNGQALDGLAPAARLARGVAR TFQVAQVFEALTALQNVQLAAQAGKGAHSISAFKRLDALCREESQALLDQTGLGELAGKQALSLPYGAKKRLELAVALAA RPRLLLLDEPAAGLAEEEREGLMHLVKGLAGQAGQAGEAMAVLYTEHNMDAVAGVADRVLVLIEGRLAAQGSFEEISRDS TVRRRYLGEGAAHA
Sequences:
>Translated_254_residues MLQVQQLVKHFGGIKAVDGVSFEVSAGECVALIGPNGAGKSTCFACIAGQYPLTGGHIVWNGQALDGLAPAARLARGVAR TFQVAQVFEALTALQNVQLAAQAGKGAHSISAFKRLDALCREESQALLDQTGLGELAGKQALSLPYGAKKRLELAVALAA RPRLLLLDEPAAGLAEEEREGLMHLVKGLAGQAGQAGEAMAVLYTEHNMDAVAGVADRVLVLIEGRLAAQGSFEEISRDS TVRRRYLGEGAAHA >Mature_254_residues MLQVQQLVKHFGGIKAVDGVSFEVSAGECVALIGPNGAGKSTCFACIAGQYPLTGGHIVWNGQALDGLAPAARLARGVAR TFQVAQVFEALTALQNVQLAAQAGKGAHSISAFKRLDALCREESQALLDQTGLGELAGKQALSLPYGAKKRLELAVALAA RPRLLLLDEPAAGLAEEEREGLMHLVKGLAGQAGQAGEAMAVLYTEHNMDAVAGVADRVLVLIEGRLAAQGSFEEISRDS TVRRRYLGEGAAHA
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI47078218, Length=245, Percent_Identity=28.1632653061224, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI45446740, Length=245, Percent_Identity=28.1632653061224, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI105990541, Length=231, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI31657092, Length=226, Percent_Identity=28.7610619469027, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI150417984, Length=251, Percent_Identity=29.0836653386454, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI153792144, Length=236, Percent_Identity=26.6949152542373, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI21536376, Length=239, Percent_Identity=26.3598326359833, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI27436953, Length=223, Percent_Identity=26.9058295964126, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI27477115, Length=237, Percent_Identity=25.7383966244726, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI27881501, Length=226, Percent_Identity=26.1061946902655, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI30795238, Length=226, Percent_Identity=26.1061946902655, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI27262624, Length=220, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI27262626, Length=220, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI6005701, Length=238, Percent_Identity=27.7310924369748, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=27.6497695852535, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI9955968, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9955966, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI45243524, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592964, Length=219, Percent_Identity=29.2237442922374, Blast_Score=64, Evalue=9e-11, Organism=Homo sapiens, GI46592971, Length=219, Percent_Identity=29.2237442922374, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI1789864, Length=256, Percent_Identity=38.671875, Blast_Score=170, Evalue=7e-44, Organism=Escherichia coli, GI1789593, Length=248, Percent_Identity=32.6612903225806, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787029, Length=245, Percent_Identity=30.6122448979592, Blast_Score=114, Evalue=4e-27, Organism=Escherichia coli, GI1789991, Length=228, Percent_Identity=30.2631578947368, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=28.4552845528455, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1790190, Length=243, Percent_Identity=26.3374485596708, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1787712, Length=244, Percent_Identity=30.327868852459, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788210, Length=236, Percent_Identity=28.8135593220339, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1788472, Length=242, Percent_Identity=25.2066115702479, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI87081791, Length=243, Percent_Identity=27.9835390946502, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI48994943, Length=235, Percent_Identity=28.5106382978723, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI87081782, Length=242, Percent_Identity=30.9917355371901, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=26.3829787234043, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=27.8008298755187, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786398, Length=242, Percent_Identity=28.099173553719, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=31.0185185185185, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1787792, Length=243, Percent_Identity=28.3950617283951, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87082268, Length=248, Percent_Identity=27.8225806451613, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788225, Length=242, Percent_Identity=31.404958677686, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786319, Length=234, Percent_Identity=29.9145299145299, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786872, Length=245, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790739, Length=253, Percent_Identity=28.0632411067194, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1786563, Length=225, Percent_Identity=31.1111111111111, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1787370, Length=236, Percent_Identity=25.4237288135593, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1787500, Length=233, Percent_Identity=26.6094420600858, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI48995001, Length=230, Percent_Identity=29.1304347826087, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87081709, Length=244, Percent_Identity=24.5901639344262, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=30.7692307692308, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1788897, Length=238, Percent_Identity=29.8319327731092, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI87081834, Length=240, Percent_Identity=28.3333333333333, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786345, Length=256, Percent_Identity=28.515625, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790544, Length=249, Percent_Identity=25.3012048192771, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=25.1082251082251, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1788506, Length=226, Percent_Identity=29.646017699115, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787972, Length=226, Percent_Identity=29.646017699115, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786803, Length=245, Percent_Identity=27.3469387755102, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI48994883, Length=252, Percent_Identity=28.1746031746032, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789873, Length=231, Percent_Identity=28.1385281385281, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI48994997, Length=243, Percent_Identity=25.5144032921811, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI145693107, Length=240, Percent_Identity=28.3333333333333, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1787164, Length=219, Percent_Identity=29.6803652968037, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787759, Length=250, Percent_Identity=27.6, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789962, Length=248, Percent_Identity=25.4032258064516, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788644, Length=248, Percent_Identity=31.0483870967742, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1786654, Length=219, Percent_Identity=29.2237442922374, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787089, Length=230, Percent_Identity=26.5217391304348, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786698, Length=222, Percent_Identity=26.1261261261261, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=26.2931034482759, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788053, Length=192, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788165, Length=228, Percent_Identity=28.5087719298246, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787112, Length=222, Percent_Identity=27.027027027027, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=25.3164556962025, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI87082267, Length=223, Percent_Identity=24.6636771300448, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17510237, Length=235, Percent_Identity=31.063829787234, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71983523, Length=231, Percent_Identity=30.7359307359307, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI71983516, Length=231, Percent_Identity=30.7359307359307, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI71983510, Length=231, Percent_Identity=30.7359307359307, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17565586, Length=234, Percent_Identity=24.7863247863248, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI115533608, Length=238, Percent_Identity=28.1512605042017, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193202349, Length=224, Percent_Identity=29.9107142857143, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71996809, Length=224, Percent_Identity=24.1071428571429, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193211015, Length=224, Percent_Identity=24.1071428571429, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI25146777, Length=221, Percent_Identity=24.8868778280543, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193209708, Length=231, Percent_Identity=25.5411255411255, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193211017, Length=224, Percent_Identity=24.1071428571429, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71984940, Length=223, Percent_Identity=26.457399103139, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI212646699, Length=220, Percent_Identity=24.5454545454545, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17569145, Length=233, Percent_Identity=27.0386266094421, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567265, Length=204, Percent_Identity=30.3921568627451, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6320339, Length=225, Percent_Identity=24.4444444444444, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574150, Length=228, Percent_Identity=31.140350877193, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI116007328, Length=228, Percent_Identity=31.140350877193, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24666092, Length=236, Percent_Identity=29.2372881355932, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI24643674, Length=235, Percent_Identity=26.3829787234043, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI221512771, Length=235, Percent_Identity=25.1063829787234, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI116007184, Length=233, Percent_Identity=25.7510729613734, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI221500365, Length=233, Percent_Identity=25.7510729613734, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24648314, Length=232, Percent_Identity=25, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI28574744, Length=221, Percent_Identity=30.316742081448, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573571, Length=236, Percent_Identity=24.5762711864407, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357907, Length=217, Percent_Identity=27.1889400921659, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI85724864, Length=230, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24580555, Length=230, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI85816269, Length=230, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24580553, Length=230, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI28571209, Length=230, Percent_Identity=23.0434782608696, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 26490; Mature: 26490
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQVQQLVKHFGGIKAVDGVSFEVSAGECVALIGPNGAGKSTCFACIAGQYPLTGGHIVW CCCHHHHHHHHCCEEEECCCEEEECCCCEEEEECCCCCCCHHHHEEECCCCCCCCCEEEE NGQALDGLAPAARLARGVARTFQVAQVFEALTALQNVQLAAQAGKGAHSISAFKRLDALC CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH REESQALLDQTGLGELAGKQALSLPYGAKKRLELAVALAARPRLLLLDEPAAGLAEEERE HHHHHHHHHHCCCHHHHCCHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH GLMHLVKGLAGQAGQAGEAMAVLYTEHNMDAVAGVADRVLVLIEGRLAAQGSFEEISRDS HHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHEEEEEECCCCCCCCHHHHHHHH TVRRRYLGEGAAHA HHHHHHHCCCCCCC >Mature Secondary Structure MLQVQQLVKHFGGIKAVDGVSFEVSAGECVALIGPNGAGKSTCFACIAGQYPLTGGHIVW CCCHHHHHHHHCCEEEECCCEEEECCCCEEEEECCCCCCCHHHHEEECCCCCCCCCEEEE NGQALDGLAPAARLARGVARTFQVAQVFEALTALQNVQLAAQAGKGAHSISAFKRLDALC CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH REESQALLDQTGLGELAGKQALSLPYGAKKRLELAVALAARPRLLLLDEPAAGLAEEERE HHHHHHHHHHCCCHHHHCCHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH GLMHLVKGLAGQAGQAGEAMAVLYTEHNMDAVAGVADRVLVLIEGRLAAQGSFEEISRDS HHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHEEEEEECCCCCCCCHHHHHHHH TVRRRYLGEGAAHA HHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]