Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is ppsA [H]
Identifier: 91788619
GI number: 91788619
Start: 2900151
End: 2902628
Strand: Direct
Name: ppsA [H]
Synonym: Bpro_2757
Alternate gene names: 91788619
Gene position: 2900151-2902628 (Clockwise)
Preceding gene: 91788618
Following gene: 91788620
Centisome position: 55.77
GC content: 65.54
Gene sequence:
>2478_bases ATGACGAAAAACTACATTCGCTGGTTTTCGGAAATCGGTGTCGCCGATGTCGCGCTGGTGGGCGGCAAGAACGCGTCGCT GGGCGAGATGGTCCGCGAACTGGGGACGCAGAATGTGCGGGTGCCCAATGGCTTTGCGGTCACGGCCGAAGCCTATCGCT ACGTGCTTGATCAGTCGGGGGCCTGGCCAGGCCTGCACGATGCACTCGACGGCCTGGACGTCAAGGACGTCGATGACCTG GCGCGGCGCGCACAGCGGGCGCGCGAGATCATCCAGGCCGCGCCGTTGCCCGAGGACCTTGTCGCCGGGATCGCCGCAGC CTACACCCGACTGCAGACCGAGTACGGCGAAGGGTTGACAGTGGCCGTGCGCAGCTCGGCGACCGCCGAAGACCTGCCGA CCGCCAGCTTTGCCGGCCAGCACGAAACCTTTCTGAACATCTCGGGACAGGCGCGCCTGCTTGATGCGGTCCGCCAGTGC TTTGCCAGCCTGTTCAAGGACCGGGCCATCGCCTACCGCGTTGACCATGGCATCGATCATTTCAGGGTGTTCCAGTCGGT GGGCGTGATGAAGATGGTGCGCGCCGACCGCGCCGCCAGCGGCGTGATCTTCACCCTCGACACCGAGACCGGATTTCGCG ACGTGGTTTTCGTCACCGGCGCCTACGGGCTGGGCGAGAACGTGGTGCAGGGCACGGTCGACCCGGACGAGTTTTATGTG TTCAAGCCCACCCTGCGGCAGGGCCACCGGGTCGTGCTCAGGCGCAAGCTCGGCGGCAAGGAAATTCGCATGGTCTATGC CCGGGCTGCCGGCCGCGAGACCACGCGCAACATGCCGACACCGCCGGAGGACCAGGCGCGTTATTGCATCAGCGACGATG AGGTGCTGGAACTTGCCGACGCCGCGATCAGGATCGAAGACCACTACAGCCGCAAGTCCGGCCACCCGACACCCATGGAC ATTGAATGGGCCAAGGATGGCCTGGACGGCAAGCTCTATATCGTCCAGGCGCGGCCAGAAACCGTGGCCTCGCGCAAACC GCTGGGAACCATCGACGAATACCGGCTGGGCGGCAAGGGTGCGCTGCGCGTCAGCGGCCGCGCCGTGGGCAGCAAGATCG CCTCGGGGCGGGCGCGCGTCATCAGCGACGTCGGCGAGCTCAACCAGTTCCAGCCCGGCGAGGTGCTGGTGGCGGACACG ACCATGCCCGACTGGGGCACGGTAATGAAGATAGCCGCCGCCGTGGTGACCAACCGGGGCGGGCGGACCTGCCACGCGGC CATCGTTGCGCGCGAAATGGGTATTCCGGCGGTGGTCGGCTGCGGCCAGGCCACCACCGCGATCCGCACCGGTGACGAGA TCACGGTGTCCTGCGCCGAAGGCAGCGAGGGCCGGGTCTACGCCGGGCTGTTGCCCTTCACGACAACGCACCTCGACGTG ACCGGCCTGCCCAGGCCGCAGACACACATGATGGTCAACATCGCCAACCCCGACACCGCGTTCCAGACCGCGCTGCTGCC CAACGACGGCGTCGGCCTGGCGCGCATGGAGTTCATCGTCGCCGAACACATCCGCGCCCACCCGATGGCGCTGGTACACC CTGAAAAAATCGAGGATGCCTCGGTACGCGAGGAAATCGCCCGCCTCACGCGTTCGTATGCCAAGCCGGCCGACTATTTC GTCCGGCAGTTGTCTGAAGGCGTGGCCACCATTGCCGCGGCCTTCTGGCCCAAGCCGGTGATTGTGCGCATGTCCGACTT CAAGACCAATGAATACGCGAGCCTGCTCGGCGGACGCTGGTTCGAGCCGGTCGAAGCCAATCCCATGATCGGCTTTCGCG GTGCCTCGCGTTATGCGCACCCGGCCTATGCCGAGGGCTTCGCGCTGGAGTGCGCGGCCATGAAACGGGTGCGCGACGAG ATGGGCCTGTCCAACGTCAGGTTGATGATCCCGTTTTGCCGCCGTGTCGAGGAAGGCGAGCGCGTGCTGCAGGCCATGGC CGGATACGGCCTGGCACGCGGCGGTCATGAAGCTGGCAAGGGGCTGGAAATTTACGTCATGTGCGAGATCCCCAACAACG TGATCCAGATCGATGCGTTTGCCCGGCTGTTCGACGGTTTCTCCATCGGCTCCAACGACCTGACGCAACTGGCGCTCGGG GTGGACCGCGACTCCGACATCGTGGCCTTCGACTTCGACGAACGTGACCCGGGCGTCAAAATGCTGATTCGCCAGACCAT AGAGGGCGCGCGGCGCAATCACCGCCACGTGGGTATTTGCGGCCAGGCGCCCTCGGACTACCCCGAAATCGCAGAATATC TGGTAGAACTCGGCATCGACTCGATGAGCGTCACCCCGGATACGCTAATGAAAATCACGCGCGACGTGCTGGCCGTGGAA GCACGGCTGGGACGCGCGCCACGCAGCGCCGCGCCGGCGCGACATGAGCCGTCATCGGCGGCCAGGAGCATGCCATGA
Upstream 100 bases:
>100_bases CTGGCGCAATACAGCGCCGCCCCGTTGCGCCTACCGTATGCCAAGGTAAAGGCAACAGCAACAACAACAGGAGACTGGCT GGCATCCGGCCACCCCCGTC
Downstream 100 bases:
>100_bases GCAAAAAAATATCGTCATTGATGCACCGTGAAGTGTGCCTGGTCGGCCTGGACGACACGGCGCAATCCGTCGAGGCCCAG ATGGTGGCCAAGGGCCTGTC
Product: phosphoenolpyruvate synthase
Products: NA
Alternate protein names: PEP synthase; Pyruvate, water dikinase [H]
Number of amino acids: Translated: 825; Mature: 824
Protein sequence:
>825_residues MTKNYIRWFSEIGVADVALVGGKNASLGEMVRELGTQNVRVPNGFAVTAEAYRYVLDQSGAWPGLHDALDGLDVKDVDDL ARRAQRAREIIQAAPLPEDLVAGIAAAYTRLQTEYGEGLTVAVRSSATAEDLPTASFAGQHETFLNISGQARLLDAVRQC FASLFKDRAIAYRVDHGIDHFRVFQSVGVMKMVRADRAASGVIFTLDTETGFRDVVFVTGAYGLGENVVQGTVDPDEFYV FKPTLRQGHRVVLRRKLGGKEIRMVYARAAGRETTRNMPTPPEDQARYCISDDEVLELADAAIRIEDHYSRKSGHPTPMD IEWAKDGLDGKLYIVQARPETVASRKPLGTIDEYRLGGKGALRVSGRAVGSKIASGRARVISDVGELNQFQPGEVLVADT TMPDWGTVMKIAAAVVTNRGGRTCHAAIVAREMGIPAVVGCGQATTAIRTGDEITVSCAEGSEGRVYAGLLPFTTTHLDV TGLPRPQTHMMVNIANPDTAFQTALLPNDGVGLARMEFIVAEHIRAHPMALVHPEKIEDASVREEIARLTRSYAKPADYF VRQLSEGVATIAAAFWPKPVIVRMSDFKTNEYASLLGGRWFEPVEANPMIGFRGASRYAHPAYAEGFALECAAMKRVRDE MGLSNVRLMIPFCRRVEEGERVLQAMAGYGLARGGHEAGKGLEIYVMCEIPNNVIQIDAFARLFDGFSIGSNDLTQLALG VDRDSDIVAFDFDERDPGVKMLIRQTIEGARRNHRHVGICGQAPSDYPEIAEYLVELGIDSMSVTPDTLMKITRDVLAVE ARLGRAPRSAAPARHEPSSAARSMP
Sequences:
>Translated_825_residues MTKNYIRWFSEIGVADVALVGGKNASLGEMVRELGTQNVRVPNGFAVTAEAYRYVLDQSGAWPGLHDALDGLDVKDVDDL ARRAQRAREIIQAAPLPEDLVAGIAAAYTRLQTEYGEGLTVAVRSSATAEDLPTASFAGQHETFLNISGQARLLDAVRQC FASLFKDRAIAYRVDHGIDHFRVFQSVGVMKMVRADRAASGVIFTLDTETGFRDVVFVTGAYGLGENVVQGTVDPDEFYV FKPTLRQGHRVVLRRKLGGKEIRMVYARAAGRETTRNMPTPPEDQARYCISDDEVLELADAAIRIEDHYSRKSGHPTPMD IEWAKDGLDGKLYIVQARPETVASRKPLGTIDEYRLGGKGALRVSGRAVGSKIASGRARVISDVGELNQFQPGEVLVADT TMPDWGTVMKIAAAVVTNRGGRTCHAAIVAREMGIPAVVGCGQATTAIRTGDEITVSCAEGSEGRVYAGLLPFTTTHLDV TGLPRPQTHMMVNIANPDTAFQTALLPNDGVGLARMEFIVAEHIRAHPMALVHPEKIEDASVREEIARLTRSYAKPADYF VRQLSEGVATIAAAFWPKPVIVRMSDFKTNEYASLLGGRWFEPVEANPMIGFRGASRYAHPAYAEGFALECAAMKRVRDE MGLSNVRLMIPFCRRVEEGERVLQAMAGYGLARGGHEAGKGLEIYVMCEIPNNVIQIDAFARLFDGFSIGSNDLTQLALG VDRDSDIVAFDFDERDPGVKMLIRQTIEGARRNHRHVGICGQAPSDYPEIAEYLVELGIDSMSVTPDTLMKITRDVLAVE ARLGRAPRSAAPARHEPSSAARSMP >Mature_824_residues TKNYIRWFSEIGVADVALVGGKNASLGEMVRELGTQNVRVPNGFAVTAEAYRYVLDQSGAWPGLHDALDGLDVKDVDDLA RRAQRAREIIQAAPLPEDLVAGIAAAYTRLQTEYGEGLTVAVRSSATAEDLPTASFAGQHETFLNISGQARLLDAVRQCF ASLFKDRAIAYRVDHGIDHFRVFQSVGVMKMVRADRAASGVIFTLDTETGFRDVVFVTGAYGLGENVVQGTVDPDEFYVF KPTLRQGHRVVLRRKLGGKEIRMVYARAAGRETTRNMPTPPEDQARYCISDDEVLELADAAIRIEDHYSRKSGHPTPMDI EWAKDGLDGKLYIVQARPETVASRKPLGTIDEYRLGGKGALRVSGRAVGSKIASGRARVISDVGELNQFQPGEVLVADTT MPDWGTVMKIAAAVVTNRGGRTCHAAIVAREMGIPAVVGCGQATTAIRTGDEITVSCAEGSEGRVYAGLLPFTTTHLDVT GLPRPQTHMMVNIANPDTAFQTALLPNDGVGLARMEFIVAEHIRAHPMALVHPEKIEDASVREEIARLTRSYAKPADYFV RQLSEGVATIAAAFWPKPVIVRMSDFKTNEYASLLGGRWFEPVEANPMIGFRGASRYAHPAYAEGFALECAAMKRVRDEM GLSNVRLMIPFCRRVEEGERVLQAMAGYGLARGGHEAGKGLEIYVMCEIPNNVIQIDAFARLFDGFSIGSNDLTQLALGV DRDSDIVAFDFDERDPGVKMLIRQTIEGARRNHRHVGICGQAPSDYPEIAEYLVELGIDSMSVTPDTLMKITRDVLAVEA RLGRAPRSAAPARHEPSSAARSMP
Specific function: Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1787994, Length=788, Percent_Identity=51.2690355329949, Blast_Score=803, Evalue=0.0, Organism=Escherichia coli, GI1788756, Length=444, Percent_Identity=24.0990990990991, Blast_Score=94, Evalue=5e-20, Organism=Escherichia coli, GI1788726, Length=187, Percent_Identity=29.9465240641711, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI48994992, Length=187, Percent_Identity=28.3422459893048, Blast_Score=76, Evalue=7e-15, Organism=Escherichia coli, GI1789193, Length=394, Percent_Identity=24.3654822335025, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17564524, Length=256, Percent_Identity=27.734375, Blast_Score=76, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR006319 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.2 [H]
Molecular weight: Translated: 90007; Mature: 89875
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKNYIRWFSEIGVADVALVGGKNASLGEMVRELGTQNVRVPNGFAVTAEAYRYVLDQSG CCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEECCCCEEEHHHHHHHHHHCCC AWPGLHDALDGLDVKDVDDLARRAQRAREIIQAAPLPEDLVAGIAAAYTRLQTEYGEGLT CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEE VAVRSSATAEDLPTASFAGQHETFLNISGQARLLDAVRQCFASLFKDRAIAYRVDHGIDH EEEECCCCHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHH FRVFQSVGVMKMVRADRAASGVIFTLDTETGFRDVVFVTGAYGLGENVVQGTVDPDEFYV HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCCHHEECCCCCCCEEE FKPTLRQGHRVVLRRKLGGKEIRMVYARAAGRETTRNMPTPPEDQARYCISDDEVLELAD ECCCHHCCHHEEHHHHCCCCEEEEEEEHHCCCHHCCCCCCCCCHHCCEECCCHHHHHHHH AAIRIEDHYSRKSGHPTPMDIEWAKDGLDGKLYIVQARPETVASRKPLGTIDEYRLGGKG HHEEEEHHHCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHCCCCCCCCHHHCCCCCC ALRVSGRAVGSKIASGRARVISDVGELNQFQPGEVLVADTTMPDWGTVMKIAAAVVTNRG EEEECCHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC GRTCHAAIVAREMGIPAVVGCGQATTAIRTGDEITVSCAEGSEGRVYAGLLPFTTTHLDV CCCHHHHHHHHHCCCCEEEECCCCHHEEECCCEEEEEECCCCCCCEEEEECCCEEEEEEE TGLPRPQTHMMVNIANPDTAFQTALLPNDGVGLARMEFIVAEHIRAHPMALVHPEKIEDA CCCCCCCCEEEEEECCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHCCEEEECCHHCCCH SVREEIARLTRSYAKPADYFVRQLSEGVATIAAAFWPKPVIVRMSDFKTNEYASLLGGRW HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCC FEPVEANPMIGFRGASRYAHPAYAEGFALECAAMKRVRDEMGLSNVRLMIPFCRRVEEGE CCCCCCCCCEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH RVLQAMAGYGLARGGHEAGKGLEIYVMCEIPNNVIQIDAFARLFDGFSIGSNDLTQLALG HHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEHHHHHHHHCCCCCCCCHHHHHHCC VDRDSDIVAFDFDERDPGVKMLIRQTIEGARRNHRHVGICGQAPSDYPEIAEYLVELGID CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC SMSVTPDTLMKITRDVLAVEARLGRAPRSAAPARHEPSSAARSMP CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCC >Mature Secondary Structure TKNYIRWFSEIGVADVALVGGKNASLGEMVRELGTQNVRVPNGFAVTAEAYRYVLDQSG CCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEECCCCEEEHHHHHHHHHHCCC AWPGLHDALDGLDVKDVDDLARRAQRAREIIQAAPLPEDLVAGIAAAYTRLQTEYGEGLT CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEE VAVRSSATAEDLPTASFAGQHETFLNISGQARLLDAVRQCFASLFKDRAIAYRVDHGIDH EEEECCCCHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHH FRVFQSVGVMKMVRADRAASGVIFTLDTETGFRDVVFVTGAYGLGENVVQGTVDPDEFYV HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCCHHEECCCCCCCEEE FKPTLRQGHRVVLRRKLGGKEIRMVYARAAGRETTRNMPTPPEDQARYCISDDEVLELAD ECCCHHCCHHEEHHHHCCCCEEEEEEEHHCCCHHCCCCCCCCCHHCCEECCCHHHHHHHH AAIRIEDHYSRKSGHPTPMDIEWAKDGLDGKLYIVQARPETVASRKPLGTIDEYRLGGKG HHEEEEHHHCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHCCCCCCCCHHHCCCCCC ALRVSGRAVGSKIASGRARVISDVGELNQFQPGEVLVADTTMPDWGTVMKIAAAVVTNRG EEEECCHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC GRTCHAAIVAREMGIPAVVGCGQATTAIRTGDEITVSCAEGSEGRVYAGLLPFTTTHLDV CCCHHHHHHHHHCCCCEEEECCCCHHEEECCCEEEEEECCCCCCCEEEEECCCEEEEEEE TGLPRPQTHMMVNIANPDTAFQTALLPNDGVGLARMEFIVAEHIRAHPMALVHPEKIEDA CCCCCCCCEEEEEECCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHCCEEEECCHHCCCH SVREEIARLTRSYAKPADYFVRQLSEGVATIAAAFWPKPVIVRMSDFKTNEYASLLGGRW HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCC FEPVEANPMIGFRGASRYAHPAYAEGFALECAAMKRVRDEMGLSNVRLMIPFCRRVEEGE CCCCCCCCCEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH RVLQAMAGYGLARGGHEAGKGLEIYVMCEIPNNVIQIDAFARLFDGFSIGSNDLTQLALG HHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEHHHHHHHHCCCCCCCCHHHHHHCC VDRDSDIVAFDFDERDPGVKMLIRQTIEGARRNHRHVGICGQAPSDYPEIAEYLVELGID CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC SMSVTPDTLMKITRDVLAVEARLGRAPRSAAPARHEPSSAARSMP CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]