Click here to switch to the map view.

The map label for this gene is yhjC [C]

Identifier: 91787738

GI number: 91787738

Start: 1919501

End: 1920403

Strand: Reverse

Name: yhjC [C]

Synonym: Bpro_1859

Alternate gene names: 91787738

Gene position: 1920403-1919501 (Counterclockwise)

Preceding gene: 91787743

Following gene: 91787725

Centisome position: 36.93

GC content: 66.11

Gene sequence:

>903_bases
ATGGACCAGCTCCGCCAGATTGAAACCTTTGTTGCCGTGGTGCAAAACGGCAGCTTCGTCAAAGCCGCCGAAAAGCTGGG
CGACTCCAAGGCCGCGGTGTCGCGCCTGGTGCTGGAACTCGAGGCCCGGCTGGACACGCGGCTCCTGAATCGCACCACGC
GCAAACAGTCGCTGACCGAATCGGGGGCCGATTATTTTGAGCGCTGCCGCAAGATCCTGGATGATCTGGCCGAAGCCAAC
CTGGCCGCCAGCGCCAGTACCGCCCGACCGGTAGGCCGGCTGCGCATCAACGCGCCGGTCAGTTTCGGCAACCTGCATCT
GGCGCCGCTGTGGGGCGGTTTTTTGCAGCGGCACCCCGACGTGACGCTGGACGTCACACTCTCCGACCGGCAGGTGGACC
TGGTGGAAGACGGCTACGACCTGGCTATCCGTATCGCCCGCCTGCTCAATTCCAGCCTGATCTCACGGCAGCTCGCCAGC
ACCCGGCTGGTGCTGTGCGCCTCGCCCGCCTACCTGAAACTGAAACGGCAGGCCCGGCTGAGCACCATTGAAGACATCGC
CGCGCACCCGGTGATCGCCTACAGCTACTGGTCAGGCGGTGACAGCTGGGCGTTCGAGGGGCCGGAGGGCCCTGTCGAGG
TGCTCACGCAGGCCCGCCTGCGCAGCAACTCCGGCGACACCTGCCTGGCCGCAGCGCTGGCGGGCCAGGGTCTGATCCTG
CAGCCCACCTTCATTGTCGGCGCCGACCTCAAGGCGGGCCGGCTGGTGGAAGTGCTGCCGCACTACCGCGCGCCGACCCT
CGCCATCCATGCGGTGTACCCGAGCCGACAGCACCTGTCGGTCAAGGTGCGGCGCATGGTCGAGTACCTGGCTGGCGCGT
TCAAAAAACCTGATTGGGAATGA

Upstream 100 bases:

>100_bases
ATTGACTCTGAATAATTGACAATAAATGGTCAGAACAGCACTCTGACCTTACTTGAACCCACTCGGCTCACTCACCGTTG
AAAAGGCGAAAACGCACACC

Downstream 100 bases:

>100_bases
ACCCGGCAGCCTGGCGGCGCCAGGTGCCGGCCAGGGCTCCAGGGTCAATCATTCATTGACCTTGCCACGCAGGTTCTTGA
TCTCCGAGCGCTGGCTTTTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDQLRQIETFVAVVQNGSFVKAAEKLGDSKAAVSRLVLELEARLDTRLLNRTTRKQSLTESGADYFERCRKILDDLAEAN
LAASASTARPVGRLRINAPVSFGNLHLAPLWGGFLQRHPDVTLDVTLSDRQVDLVEDGYDLAIRIARLLNSSLISRQLAS
TRLVLCASPAYLKLKRQARLSTIEDIAAHPVIAYSYWSGGDSWAFEGPEGPVEVLTQARLRSNSGDTCLAAALAGQGLIL
QPTFIVGADLKAGRLVEVLPHYRAPTLAIHAVYPSRQHLSVKVRRMVEYLAGAFKKPDWE

Sequences:

>Translated_300_residues
MDQLRQIETFVAVVQNGSFVKAAEKLGDSKAAVSRLVLELEARLDTRLLNRTTRKQSLTESGADYFERCRKILDDLAEAN
LAASASTARPVGRLRINAPVSFGNLHLAPLWGGFLQRHPDVTLDVTLSDRQVDLVEDGYDLAIRIARLLNSSLISRQLAS
TRLVLCASPAYLKLKRQARLSTIEDIAAHPVIAYSYWSGGDSWAFEGPEGPVEVLTQARLRSNSGDTCLAAALAGQGLIL
QPTFIVGADLKAGRLVEVLPHYRAPTLAIHAVYPSRQHLSVKVRRMVEYLAGAFKKPDWE
>Mature_300_residues
MDQLRQIETFVAVVQNGSFVKAAEKLGDSKAAVSRLVLELEARLDTRLLNRTTRKQSLTESGADYFERCRKILDDLAEAN
LAASASTARPVGRLRINAPVSFGNLHLAPLWGGFLQRHPDVTLDVTLSDRQVDLVEDGYDLAIRIARLLNSSLISRQLAS
TRLVLCASPAYLKLKRQARLSTIEDIAAHPVIAYSYWSGGDSWAFEGPEGPVEVLTQARLRSNSGDTCLAAALAGQGLIL
QPTFIVGADLKAGRLVEVLPHYRAPTLAIHAVYPSRQHLSVKVRRMVEYLAGAFKKPDWE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=35.5704697986577, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=34.3642611683849, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789440, Length=305, Percent_Identity=33.4426229508197, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=34.0136054421769, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=30.1694915254237, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=30.6338028169014, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=26.4285714285714, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=30.4347826086957, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786448, Length=282, Percent_Identity=27.3049645390071, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788706, Length=258, Percent_Identity=27.906976744186, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI157672245, Length=185, Percent_Identity=28.6486486486486, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32982; Mature: 32982

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLRQIETFVAVVQNGSFVKAAEKLGDSKAAVSRLVLELEARLDTRLLNRTTRKQSLTE
CCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGADYFERCRKILDDLAEANLAASASTARPVGRLRINAPVSFGNLHLAPLWGGFLQRHPD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCEEEHHHHHHHHHCCCC
VTLDVTLSDRQVDLVEDGYDLAIRIARLLNSSLISRQLASTRLVLCASPAYLKLKRQARL
CEEEEEECCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHH
STIEDIAAHPVIAYSYWSGGDSWAFEGPEGPVEVLTQARLRSNSGDTCLAAALAGQGLIL
HHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEE
QPTFIVGADLKAGRLVEVLPHYRAPTLAIHAVYPSRQHLSVKVRRMVEYLAGAFKKPDWE
ECCEEEECCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDQLRQIETFVAVVQNGSFVKAAEKLGDSKAAVSRLVLELEARLDTRLLNRTTRKQSLTE
CCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGADYFERCRKILDDLAEANLAASASTARPVGRLRINAPVSFGNLHLAPLWGGFLQRHPD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCEEEHHHHHHHHHCCCC
VTLDVTLSDRQVDLVEDGYDLAIRIARLLNSSLISRQLASTRLVLCASPAYLKLKRQARL
CEEEEEECCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHH
STIEDIAAHPVIAYSYWSGGDSWAFEGPEGPVEVLTQARLRSNSGDTCLAAALAGQGLIL
HHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEE
QPTFIVGADLKAGRLVEVLPHYRAPTLAIHAVYPSRQHLSVKVRRMVEYLAGAFKKPDWE
ECCEEEECCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]