Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is xcpS [H]
Identifier: 91787227
GI number: 91787227
Start: 1370920
End: 1372152
Strand: Direct
Name: xcpS [H]
Synonym: Bpro_1331
Alternate gene names: 91787227
Gene position: 1370920-1372152 (Clockwise)
Preceding gene: 91787226
Following gene: 91787228
Centisome position: 26.36
GC content: 66.1
Gene sequence:
>1233_bases ATGCCCGCCTATTCTTTTGAGGCCATGCAGAACGACGGCAAGCTCCGCCGGGGGGTGATCGAGGCTGACACGGCCAAGGC AGCGCGCGGCCTGCTGCGCACGCAGGCGCTGGTGCCACTGGTTGTCGAGCCGGTGAGCGGCAGCGCTGGCCCGGGCATCC CCCGTTCGTTGCTGCAGACGCCCTTGTTTGGCGGCCGCGTCTTCAATACCGCGAACCTGACGATCTGGACGCGCCAGCTC GCCGGGCTGGTTTCGTCCGGCCTGCCGCTGGAGCGTGCGCTGACCGCGCTGACCGACGAAGCCGAGGACGAGAAGCAGCG CAACCTGGTGGCCGCCCTGCGCGCCGAGGTGAACGGCGGGGCGAGCTTTGCCCGGGCGCTGTCGCACCACCCCGGCGAAT TCTCGGCGATCTACATCGCCGTCATCGGCGCGGGGGAGCAAACCGGCTACCTGGGCCTGGTGCTTGAACGTCTGGCTGAC GACCTGGAGGAGCGCCAGACGCTCAAGGCCAAACTCATAGGCGCGGCGCTGTACCCGGCTATCGTGACGCTGGTGGCCAT CGTGATCGTGATGTTCCTGGTCGGCTATGTGGTGCCGCAGGTGGCCAGCGTCTTTGCGGGCACCAAGCGGGCGCTGCCTT TCCTTACCGTGGCCATGCTGGCCATCAGCGGCTTTGTGCGCAGCTATGGATGGGCGCTGCTGGGTGCTCTTGTTCTGATA GTGACAAGTATCCGTCTGGCCTTGAGAAACGAAGGTTTCCGCGAGAAATTCGACGCCAGAACCCTGACCCTGCCGCTGGT CGGACGGCTCTCGCGTGACTACAACGCGGCGCGCTTTGCCAGCACGCTGGCCATGCTGGCTGGCGCGGGCGTGCCCATTC TCAAGGCCTTGCAGGCGGCTGCCGAAACCCTGTCCAACCGTGCCATGCGCGCTGACGCGCTCGATGCCCTCCTGCTGGTG CGCGAGGGTGCTCCACTGGCCTCGGCGCTGGCGCAGAAAAAACGCTTTCCCGGCCTGGTGAGCATGTTTGCGCGCCTGGG CGAGCAGACGGGCCAGCTGCCCGTGATGCTGCAGCGCGCCGCCCTGCAGCTGTCCAACGAAGTGCAGCGGCGCGCCATGG CACTGGCCACCATTTTGGAGCCGCTGCTCATAGTGGCGATGGGGCTGGTGGTGATGCTGATCGTGCTGGCGGTGCTACTG CCGATTATTCAGCTCAACCAGTTCGTGAAATGA
Upstream 100 bases:
>100_bases GGTGAGCGGCTGGTCACCGCCGGCGTCACCTCGCGCGAGGAGTTGCTGCGCGTGACCCCCGACTGAACCCGCACCGGCCC GAATACTGCGCCAAGCCATC
Downstream 100 bases:
>100_bases GCGATATGAGCGATATGAGCGACTGAGTTTCGGCTGCGATCCCGGACGCCTGCCGGGATCGACCGGTGGTTTTTAAACAA GTTACGCGGCGCGGCCTCAA
Product: general secretion pathway protein F
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MPAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQTPLFGGRVFNTANLTIWTRQL AGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGGASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLAD DLEERQTLKAKLIGAALYPAIVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLI VTSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAAAETLSNRAMRADALDALLLV REGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRAALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLL PIIQLNQFVK
Sequences:
>Translated_410_residues MPAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQTPLFGGRVFNTANLTIWTRQL AGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGGASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLAD DLEERQTLKAKLIGAALYPAIVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLI VTSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAAAETLSNRAMRADALDALLLV REGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRAALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLL PIIQLNQFVK >Mature_409_residues PAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQTPLFGGRVFNTANLTIWTRQLA GLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGGASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLADD LEERQTLKAKLIGAALYPAIVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLIV TSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAAAETLSNRAMRADALDALLLVR EGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRAALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLLP IIQLNQFVK
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane [H]
COG id: COG1459
COG function: function code NU; Type II secretory pathway, component PulF
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP F family [H]
Homologues:
Organism=Escherichia coli, GI1789724, Length=407, Percent_Identity=32.9238329238329, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1786295, Length=410, Percent_Identity=25.3658536585366, Blast_Score=105, Evalue=5e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003004 - InterPro: IPR011850 - InterPro: IPR018076 - InterPro: IPR001992 [H]
Pfam domain/function: PF00482 GSPII_F [H]
EC number: NA
Molecular weight: Translated: 43748; Mature: 43617
Theoretical pI: Translated: 10.61; Mature: 10.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQT CCCCCHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHC PLFGGRVFNTANLTIWTRQLAGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGG CCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC ASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLADDLEERQTLKAKLIGAALYPA HHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLI HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAA HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH AETLSNRAMRADALDALLLVREGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH ALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLLPIIQLNQFVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQT CCCCHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHC PLFGGRVFNTANLTIWTRQLAGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGG CCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC ASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLADDLEERQTLKAKLIGAALYPA HHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLI HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAA HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH AETLSNRAMRADALDALLLVREGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH ALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLLPIIQLNQFVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1588814; 10984043 [H]