Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is xcpS [H]

Identifier: 91787227

GI number: 91787227

Start: 1370920

End: 1372152

Strand: Direct

Name: xcpS [H]

Synonym: Bpro_1331

Alternate gene names: 91787227

Gene position: 1370920-1372152 (Clockwise)

Preceding gene: 91787226

Following gene: 91787228

Centisome position: 26.36

GC content: 66.1

Gene sequence:

>1233_bases
ATGCCCGCCTATTCTTTTGAGGCCATGCAGAACGACGGCAAGCTCCGCCGGGGGGTGATCGAGGCTGACACGGCCAAGGC
AGCGCGCGGCCTGCTGCGCACGCAGGCGCTGGTGCCACTGGTTGTCGAGCCGGTGAGCGGCAGCGCTGGCCCGGGCATCC
CCCGTTCGTTGCTGCAGACGCCCTTGTTTGGCGGCCGCGTCTTCAATACCGCGAACCTGACGATCTGGACGCGCCAGCTC
GCCGGGCTGGTTTCGTCCGGCCTGCCGCTGGAGCGTGCGCTGACCGCGCTGACCGACGAAGCCGAGGACGAGAAGCAGCG
CAACCTGGTGGCCGCCCTGCGCGCCGAGGTGAACGGCGGGGCGAGCTTTGCCCGGGCGCTGTCGCACCACCCCGGCGAAT
TCTCGGCGATCTACATCGCCGTCATCGGCGCGGGGGAGCAAACCGGCTACCTGGGCCTGGTGCTTGAACGTCTGGCTGAC
GACCTGGAGGAGCGCCAGACGCTCAAGGCCAAACTCATAGGCGCGGCGCTGTACCCGGCTATCGTGACGCTGGTGGCCAT
CGTGATCGTGATGTTCCTGGTCGGCTATGTGGTGCCGCAGGTGGCCAGCGTCTTTGCGGGCACCAAGCGGGCGCTGCCTT
TCCTTACCGTGGCCATGCTGGCCATCAGCGGCTTTGTGCGCAGCTATGGATGGGCGCTGCTGGGTGCTCTTGTTCTGATA
GTGACAAGTATCCGTCTGGCCTTGAGAAACGAAGGTTTCCGCGAGAAATTCGACGCCAGAACCCTGACCCTGCCGCTGGT
CGGACGGCTCTCGCGTGACTACAACGCGGCGCGCTTTGCCAGCACGCTGGCCATGCTGGCTGGCGCGGGCGTGCCCATTC
TCAAGGCCTTGCAGGCGGCTGCCGAAACCCTGTCCAACCGTGCCATGCGCGCTGACGCGCTCGATGCCCTCCTGCTGGTG
CGCGAGGGTGCTCCACTGGCCTCGGCGCTGGCGCAGAAAAAACGCTTTCCCGGCCTGGTGAGCATGTTTGCGCGCCTGGG
CGAGCAGACGGGCCAGCTGCCCGTGATGCTGCAGCGCGCCGCCCTGCAGCTGTCCAACGAAGTGCAGCGGCGCGCCATGG
CACTGGCCACCATTTTGGAGCCGCTGCTCATAGTGGCGATGGGGCTGGTGGTGATGCTGATCGTGCTGGCGGTGCTACTG
CCGATTATTCAGCTCAACCAGTTCGTGAAATGA

Upstream 100 bases:

>100_bases
GGTGAGCGGCTGGTCACCGCCGGCGTCACCTCGCGCGAGGAGTTGCTGCGCGTGACCCCCGACTGAACCCGCACCGGCCC
GAATACTGCGCCAAGCCATC

Downstream 100 bases:

>100_bases
GCGATATGAGCGATATGAGCGACTGAGTTTCGGCTGCGATCCCGGACGCCTGCCGGGATCGACCGGTGGTTTTTAAACAA
GTTACGCGGCGCGGCCTCAA

Product: general secretion pathway protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MPAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQTPLFGGRVFNTANLTIWTRQL
AGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGGASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLAD
DLEERQTLKAKLIGAALYPAIVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLI
VTSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAAAETLSNRAMRADALDALLLV
REGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRAALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLL
PIIQLNQFVK

Sequences:

>Translated_410_residues
MPAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQTPLFGGRVFNTANLTIWTRQL
AGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGGASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLAD
DLEERQTLKAKLIGAALYPAIVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLI
VTSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAAAETLSNRAMRADALDALLLV
REGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRAALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLL
PIIQLNQFVK
>Mature_409_residues
PAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQTPLFGGRVFNTANLTIWTRQLA
GLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGGASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLADD
LEERQTLKAKLIGAALYPAIVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLIV
TSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAAAETLSNRAMRADALDALLLVR
EGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRAALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLLP
IIQLNQFVK

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=407, Percent_Identity=32.9238329238329, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1786295, Length=410, Percent_Identity=25.3658536585366, Blast_Score=105, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR011850
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 43748; Mature: 43617

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQT
CCCCCHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHC
PLFGGRVFNTANLTIWTRQLAGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGG
CCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
ASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLADDLEERQTLKAKLIGAALYPA
HHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAA
HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
AETLSNRAMRADALDALLLVREGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
ALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLLPIIQLNQFVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAYSFEAMQNDGKLRRGVIEADTAKAARGLLRTQALVPLVVEPVSGSAGPGIPRSLLQT
CCCCHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHC
PLFGGRVFNTANLTIWTRQLAGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGG
CCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
ASFARALSHHPGEFSAIYIAVIGAGEQTGYLGLVLERLADDLEERQTLKAKLIGAALYPA
HHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVTLVAIVIVMFLVGYVVPQVASVFAGTKRALPFLTVAMLAISGFVRSYGWALLGALVLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTSIRLALRNEGFREKFDARTLTLPLVGRLSRDYNAARFASTLAMLAGAGVPILKALQAA
HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
AETLSNRAMRADALDALLLVREGAPLASALAQKKRFPGLVSMFARLGEQTGQLPVMLQRA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
ALQLSNEVQRRAMALATILEPLLIVAMGLVVMLIVLAVLLPIIQLNQFVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1588814; 10984043 [H]