Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is ctaA [H]
Identifier: 91787150
GI number: 91787150
Start: 1297304
End: 1298455
Strand: Direct
Name: ctaA [H]
Synonym: Bpro_1253
Alternate gene names: 91787150
Gene position: 1297304-1298455 (Clockwise)
Preceding gene: 91787149
Following gene: 91787151
Centisome position: 24.95
GC content: 65.8
Gene sequence:
>1152_bases ATGAGCACGCAAGACCTCTATAACCTGAGCCCCGCGCTGCGCCTGATGATCATGGGCCTGGTGGTCGCGCTCGGCCCGCT GGCCTGGGTCTGGCTGCACCACAAACAGGCGCCGGTTTCGCGGCGCCTGCGCGTGCTGACCCTGGTCACGTTGTTCCTGA CCTTTGACCTGGTGATTTTTGGTGCCTTCACCCGCCTGACAGATTCCGGCCTGGGCTGCCCAGACTGGCCGGGTTGCTAC GGCAGTGCCAGCCCGGTGGGCGCGCAAATGCATATCGAGGCCGCGCAGAGCGCCATGCCCACGGGCCCGGTCACCCATAC CAAGGCCTGGATCGAAATGATTCACCGCTATCTGGCCACCGGTGTGGGCGTGCTGATCCTCACGCTTGCCATCGTCAGCT GGCTGGAACGCGAGCGGGCGCATATCTCGCCAGCGTGGCCCACGGTGACATTGCTGTGGGTGTGCCTGCAAGGCGCGTTC GGCGCGCTCACCGTCACGATGAAACTGTTTCCGGCCATCGTCACACTGCACCTGCTCGGCGGCCTGATTTTGCTGGGGCT GCTGCGCGCGCAGTCGGTGCGTTATGCGCAGGCGCAAGGGGCTTCCCCGATCGTCGAGCTGAGCGCGGGTACCCGGCTTT TTGTTTTCGCCGCGTTCGCTCTGCTGTGGCTGCAGATCGCCCTGGGGGGCTGGGTCAGCACCAACTACGCGGTGCTTGCC TGCACGGACTTCCCGAGCTGCCAGAACTCGCTGTGGCCCGCGATGGATTTCAGCCAGGGATTCACGCTCTGGCGCGAACT GGGCGCCGGCCATGACGGCGCCAATATCAGCTTTCAGGCACTCACCGCCATCCATTACGCGCACCGTCTGGCCGCCTATG CGGTGTTTGCCGTGCTGATGCTGCTGGCCGCCAGGCTTTACCGCGTGCCAGCCCTGCGTCCTGATGCGTGCTGGCTGGGC GGCCTCACCCTGCTGCAGGCGGCCACGGGCCTGAGCAACGTCGTGCTGGGCTGGCCGCTGGTGGCCGCGGTGGCGCACAC CGGCGGCGCCGCAGCGCTGGTGGTGGTGCTCACCGGCATCGTTTTTTCCAGCCGCAGCATCCCCAGCGCAGTCCATGCGT CAAAATGGAAAGCTTCGAGATTGTCCGCATGA
Upstream 100 bases:
>100_bases AGACCCCTGTGGTGACTGCTATGGTCTGGCGAAGCCGGTTCCGCGGCCCCTGCTGGTTTGGGATTCCAATGCGCATGGCA ATGGCTGGCGCTCTTTAGAC
Downstream 100 bases:
>100_bases ACCCCAGCAACCCTGCCGCTTCGGCCCCCCATTCCCGCGCACCGTCCAGGTTCGCCCAGTTCTACGCGCTGACCAAGCCG CGCGTGGTGCAGCTCATTGT
Product: cytochrome oxidase assembly
Products: NA
Alternate protein names: HAS; Cytochrome aa3-controlling protein [H]
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MSTQDLYNLSPALRLMIMGLVVALGPLAWVWLHHKQAPVSRRLRVLTLVTLFLTFDLVIFGAFTRLTDSGLGCPDWPGCY GSASPVGAQMHIEAAQSAMPTGPVTHTKAWIEMIHRYLATGVGVLILTLAIVSWLERERAHISPAWPTVTLLWVCLQGAF GALTVTMKLFPAIVTLHLLGGLILLGLLRAQSVRYAQAQGASPIVELSAGTRLFVFAAFALLWLQIALGGWVSTNYAVLA CTDFPSCQNSLWPAMDFSQGFTLWRELGAGHDGANISFQALTAIHYAHRLAAYAVFAVLMLLAARLYRVPALRPDACWLG GLTLLQAATGLSNVVLGWPLVAAVAHTGGAAALVVVLTGIVFSSRSIPSAVHASKWKASRLSA
Sequences:
>Translated_383_residues MSTQDLYNLSPALRLMIMGLVVALGPLAWVWLHHKQAPVSRRLRVLTLVTLFLTFDLVIFGAFTRLTDSGLGCPDWPGCY GSASPVGAQMHIEAAQSAMPTGPVTHTKAWIEMIHRYLATGVGVLILTLAIVSWLERERAHISPAWPTVTLLWVCLQGAF GALTVTMKLFPAIVTLHLLGGLILLGLLRAQSVRYAQAQGASPIVELSAGTRLFVFAAFALLWLQIALGGWVSTNYAVLA CTDFPSCQNSLWPAMDFSQGFTLWRELGAGHDGANISFQALTAIHYAHRLAAYAVFAVLMLLAARLYRVPALRPDACWLG GLTLLQAATGLSNVVLGWPLVAAVAHTGGAAALVVVLTGIVFSSRSIPSAVHASKWKASRLSA >Mature_382_residues STQDLYNLSPALRLMIMGLVVALGPLAWVWLHHKQAPVSRRLRVLTLVTLFLTFDLVIFGAFTRLTDSGLGCPDWPGCYG SASPVGAQMHIEAAQSAMPTGPVTHTKAWIEMIHRYLATGVGVLILTLAIVSWLERERAHISPAWPTVTLLWVCLQGAFG ALTVTMKLFPAIVTLHLLGGLILLGLLRAQSVRYAQAQGASPIVELSAGTRLFVFAAFALLWLQIALGGWVSTNYAVLAC TDFPSCQNSLWPAMDFSQGFTLWRELGAGHDGANISFQALTAIHYAHRLAAYAVFAVLMLLAARLYRVPALRPDACWLGG LTLLQAATGLSNVVLGWPLVAAVAHTGGAAALVVVLTGIVFSSRSIPSAVHASKWKASRLSA
Specific function: Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. Also involved in the sporulation [H]
COG id: COG1612
COG function: function code O; Uncharacterized protein required for cytochrome oxidase assembly
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the COX15/CtaA family. Type 1 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003780 [H]
Pfam domain/function: PF02628 COX15-CtaA [H]
EC number: NA
Molecular weight: Translated: 41083; Mature: 40952
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTQDLYNLSPALRLMIMGLVVALGPLAWVWLHHKQAPVSRRLRVLTLVTLFLTFDLVIF CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH GAFTRLTDSGLGCPDWPGCYGSASPVGAQMHIEAAQSAMPTGPVTHTKAWIEMIHRYLAT HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHH GVGVLILTLAIVSWLERERAHISPAWPTVTLLWVCLQGAFGALTVTMKLFPAIVTLHLLG HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH GLILLGLLRAQSVRYAQAQGASPIVELSAGTRLFVFAAFALLWLQIALGGWVSTNYAVLA HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE CTDFPSCQNSLWPAMDFSQGFTLWRELGAGHDGANISFQALTAIHYAHRLAAYAVFAVLM ECCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLAARLYRVPALRPDACWLGGLTLLQAATGLSNVVLGWPLVAAVAHTGGAAALVVVLTGI HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VFSSRSIPSAVHASKWKASRLSA HHCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure STQDLYNLSPALRLMIMGLVVALGPLAWVWLHHKQAPVSRRLRVLTLVTLFLTFDLVIF CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH GAFTRLTDSGLGCPDWPGCYGSASPVGAQMHIEAAQSAMPTGPVTHTKAWIEMIHRYLAT HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHH GVGVLILTLAIVSWLERERAHISPAWPTVTLLWVCLQGAFGALTVTMKLFPAIVTLHLLG HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH GLILLGLLRAQSVRYAQAQGASPIVELSAGTRLFVFAAFALLWLQIALGGWVSTNYAVLA HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE CTDFPSCQNSLWPAMDFSQGFTLWRELGAGHDGANISFQALTAIHYAHRLAAYAVFAVLM ECCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLAARLYRVPALRPDACWLGGLTLLQAATGLSNVVLGWPLVAAVAHTGGAAALVVVLTGI HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VFSSRSIPSAVHASKWKASRLSA HHCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7678007 [H]