Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is murE [H]
Identifier: 91786968
GI number: 91786968
Start: 1100565
End: 1102070
Strand: Direct
Name: murE [H]
Synonym: Bpro_1070
Alternate gene names: 91786968
Gene position: 1100565-1102070 (Clockwise)
Preceding gene: 91786967
Following gene: 91786969
Centisome position: 21.16
GC content: 64.67
Gene sequence:
>1506_bases TTGACAACCCAGCTCCATACCCCCGAGCAGGCGGCCCGCTGGTTGCGTGAGCGCGTGACCGGCAGCCTGCGGACGGACAG CCGCATGGTGGGCGGCGGTGACGGATTCATTGCGTGGCCTGGCGCCGCGACGGACGGCCGGAAGTATCTCGGTGATGCAC TGGCTTCGGGCGCCCGCGCCTGCCTGGTGGAGTTGCAGGGTTTTGAGCCCCGCGGCCCGGATGACGAAAGGGTGGCCGCT TACGCAGGACTCAAGGCGGCAACCGGCCCCATCGCCGCTGCCTATTTTGATGAGCCAAGCCGGCATTTGCAGGTCGCGGC CGTCACCGGCACCAATGGCAAGACATCGACAACATGGTGGCTGGCCCAGGCGCTGGGCAGGCTGGGGCGCAAATGCGGTG TCGTGGGAACCCTGGGCATCGGGGCGCCCGGTGCGGTGGTTTTCACGGGGTTGACCACCCCTGATCCTGTGCTGCTCCAG CAGCAAATGCGCCGTTTTGTGGATGAGGGCTTCGCCACCTGCGCCCTGGAGGCTTCCTCGATAGGGCTGGTGGAGCGGCG GCTGGACGCCACCACCATACAGGTCGCGATCTTCACCAACTTCACGCAGGACCATCTCGACTACCACCCGTCCATGCAGG ACTATTGGGAGGCCAAGAAAATGCTGTTCAGCTGGCCAGGCCTGAAGGCAGCAGTCATCAATGTGGACGATGGCAAAGGC CTTGAGCTGAGCGCGTCACTGGCCGGCTCGGACCTGGATGTCTGGACATTGTCCTGCACAGGGCCGGCCCGAATTCATGC ACAAAAAATTCACCACGGCGTGAATGGCGTGAGTTTTGATGTTGTCGAAGGCGCGGAGCAGCACCGAGTTTCCAGCAAGC TGGTCGGCCAGTACAACGTGTACAACCTGCTGGGCGTCATCGCGGCCCTGCGTGCCATGGGCATACCGCTGGTCGATGCC GTGGCTGCTTGCGCCGACCTGCTGCCGGTGCCGGGGCGCATGGACACGCTGGCGGAAGAAGGCCTGCCCCTGGTCGTCAT CGATTACGCGCACACGCCTGACGCCCTGGAAAAAGTACTCACAGCGCTTCAGCCGGTCGCGCGCAGCCGCGGTGGCCAGC TCTGGTGCGTCTTTGGCTGTGGCGGAGACCGCGATGCCGGCAAACGCCCGCTGATGGCAGCGGTGGCGGAAAAAAATGCC GACCGGGTGGTGGTCACCAGCGACAACCCGCGCAGTGAGAATCCGCTGGCCATCATCGACCAGGTGCTGAGGGGGTTGAA TCACCGCGATGCCGTGCACGTGCAGGCAGACCGGGCCATGGCGATTACGCATGCGCTGAGTTTGGCGCAAGCCCATGATG TGGTGCTGCTGGCGGGCAAGGGGCATGAAAGTTATCAAGAGGTCCAGGGCGTGAAGCTTCCTTTTTCCGACAGGACGCAG GCGCAAGCCGCTCTCGCCCTGAATGCGGCGCGCGTGGCACGCCAGGCCGGGGGAGGCTCCGCATGA
Upstream 100 bases:
>100_bases TATTCAGCGAAGTGGTGCAGCAGACGTTGCGCATGATGGGCGTGCAGCCGGACGTGAGCGTCAAGCCGCAAATCGTGACG CAGGCTGTCGAGGAGTCGTT
Downstream 100 bases:
>100_bases TGACCTTGCAACAAGCCCTGGGCTGGTTGCCGTCGGCCCGGCTAGTGGGTGATGGCAGCGTGAAGCCTCTGCGCGTGCAC ACCGATACCCGCAGCCTGCA
Product: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
Products: NA
Alternate protein names: Meso-A2pm-adding enzyme; Meso-diaminopimelate-adding enzyme; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; UDP-MurNAc-tripeptide synthetase; UDP-N-acetylmuramyl-tripeptide synthetase [H]
Number of amino acids: Translated: 501; Mature: 500
Protein sequence:
>501_residues MTTQLHTPEQAARWLRERVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARACLVELQGFEPRGPDDERVAA YAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWWLAQALGRLGRKCGVVGTLGIGAPGAVVFTGLTTPDPVLLQ QQMRRFVDEGFATCALEASSIGLVERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSWPGLKAAVINVDDGKG LELSASLAGSDLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSSKLVGQYNVYNLLGVIAALRAMGIPLVDA VAACADLLPVPGRMDTLAEEGLPLVVIDYAHTPDALEKVLTALQPVARSRGGQLWCVFGCGGDRDAGKRPLMAAVAEKNA DRVVVTSDNPRSENPLAIIDQVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKGHESYQEVQGVKLPFSDRTQ AQAALALNAARVARQAGGGSA
Sequences:
>Translated_501_residues MTTQLHTPEQAARWLRERVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARACLVELQGFEPRGPDDERVAA YAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWWLAQALGRLGRKCGVVGTLGIGAPGAVVFTGLTTPDPVLLQ QQMRRFVDEGFATCALEASSIGLVERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSWPGLKAAVINVDDGKG LELSASLAGSDLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSSKLVGQYNVYNLLGVIAALRAMGIPLVDA VAACADLLPVPGRMDTLAEEGLPLVVIDYAHTPDALEKVLTALQPVARSRGGQLWCVFGCGGDRDAGKRPLMAAVAEKNA DRVVVTSDNPRSENPLAIIDQVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKGHESYQEVQGVKLPFSDRTQ AQAALALNAARVARQAGGGSA >Mature_500_residues TTQLHTPEQAARWLRERVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARACLVELQGFEPRGPDDERVAAY AGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWWLAQALGRLGRKCGVVGTLGIGAPGAVVFTGLTTPDPVLLQQ QMRRFVDEGFATCALEASSIGLVERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSWPGLKAAVINVDDGKGL ELSASLAGSDLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSSKLVGQYNVYNLLGVIAALRAMGIPLVDAV AACADLLPVPGRMDTLAEEGLPLVVIDYAHTPDALEKVLTALQPVARSRGGQLWCVFGCGGDRDAGKRPLMAAVAEKNAD RVVVTSDNPRSENPLAIIDQVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKGHESYQEVQGVKLPFSDRTQA QAALALNAARVARQAGGGSA
Specific function: Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan [H]
COG id: COG0769
COG function: function code M; UDP-N-acetylmuramyl tripeptide synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family. MurE subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786273, Length=481, Percent_Identity=41.995841995842, Blast_Score=293, Evalue=2e-80,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005761 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: =6.3.2.13 [H]
Molecular weight: Translated: 53152; Mature: 53021
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQLHTPEQAARWLRERVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARA CCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCE CLVELQGFEPRGPDDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWW EEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCHHHH LAQALGRLGRKCGVVGTLGIGAPGAVVFTGLTTPDPVLLQQQMRRFVDEGFATCALEASS HHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC IGLVERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSWPGLKAAVINVDDGKG CHHHHHHCCCEEEEEEEEECCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC LELSASLAGSDLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSSKLVGQYNV CEEEEECCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEHHHCCHHHHHHHHHHHCCHHH YNLLGVIAALRAMGIPLVDAVAACADLLPVPGRMDTLAEEGLPLVVIDYAHTPDALEKVL HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCHHHHHHHH TALQPVARSRGGQLWCVFGCGGDRDAGKRPLMAAVAEKNADRVVVTSDNPRSENPLAIID HHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCHHHHH QVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKGHESYQEVQGVKLPFSDRTQ HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCCCCCCCHH AQAALALNAARVARQAGGGSA HHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TTQLHTPEQAARWLRERVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARA CCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCE CLVELQGFEPRGPDDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWW EEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCHHHH LAQALGRLGRKCGVVGTLGIGAPGAVVFTGLTTPDPVLLQQQMRRFVDEGFATCALEASS HHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC IGLVERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSWPGLKAAVINVDDGKG CHHHHHHCCCEEEEEEEEECCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC LELSASLAGSDLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSSKLVGQYNV CEEEEECCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEHHHCCHHHHHHHHHHHCCHHH YNLLGVIAALRAMGIPLVDAVAACADLLPVPGRMDTLAEEGLPLVVIDYAHTPDALEKVL HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCHHHHHHHH TALQPVARSRGGQLWCVFGCGGDRDAGKRPLMAAVAEKNADRVVVTSDNPRSENPLAIID HHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCHHHHH QVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKGHESYQEVQGVKLPFSDRTQ HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCCCCCCCHH AQAALALNAARVARQAGGGSA HHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA