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The map label for this gene is dapF [H]

Identifier: 91786956

GI number: 91786956

Start: 1085196

End: 1086095

Strand: Direct

Name: dapF [H]

Synonym: Bpro_1058

Alternate gene names: 91786956

Gene position: 1085196-1086095 (Clockwise)

Preceding gene: 91786954

Following gene: 91786957

Centisome position: 20.87

GC content: 64.0

Gene sequence:

>900_bases
ATGAGGTCGGCGGATAATGGCGCAATGCTAATCCGTTTTACAAAAATGCAGGGTGCGGGCAACGACTTTGTGATGCTCGA
CGAGACCCGCGGGCGCCTGAACCTGTCGACGGCACAGTACCGTTTTCTGGCCGACCGGCACTTCGGCGTCGGCGCCGACC
AGATTCTGTCGGTGCGGCCTTCCCCCGGGGAGGGCATCGACTTTGAATATGTGATTCACAACGCCGATGGCGGCGAAGTG
GAACAGTGCGGCAATGGGGCACGCTGTTTTGTGCGTTTTGTGCGCGAACAGGGGCTGACCAGCAAGGATGCGGTCAGGGT
CAAGACCCTGAGCGGCGTGATCGAGCCGCGCATGCAGGCGGATGGCCGCGTGACGGTGGACATGGGCGCGCCGGTGTTTG
AGTTGGCGCGCATTCCCTTCGATGCGGCGGGGTTGACGGCGCAGCCCGCTGGCTCATGGGAGAAATGGCCGCTGACCCTT
GAAGACAAGGCGCTTTCAGCGACTGTTTCCATCGCCGTGCTGTCGATGGGCAATCCCCATGCGGTGCAGCTGGTCGACGA
CGTAGATACGGCGCCGGTGCTGGAGACCGGCCCCTTGATTGAGCACCATATGCGTTTCCCCAAACGCGTCAATGCGGGCT
TCATGCAGGTCGTCTCGCGCAGCCGCATCCGCCTGCGGGTGTACGAGCGCGGCGCTGGCGAAACACTGGCCTGCGGCACC
GGCGCCTGTGCGGCGGTGGTGGCCGGCATACGCTGGGGCCTGCTCGATGCGCGGGTGGACGTGCAGACCCGCGGCGGCCA
GCTGACGATTGAATGGGCGGGCGGCTTCGATGCCCCGGTCATGATGACCGGCCCGGCCACTACCGTGTTCGAGTCCGAGA
TTGAAGTTCCCGAGTTATAA

Upstream 100 bases:

>100_bases
GGCTCCATTCGGGAATGCGCATGCTTGTCTTTCGTGGTTGAGGGGCGGTGGTCGGCGCCGCAAAGCGGCAAGGCGCAGCG
TCGGCGGGTAAGGTTGGCGG

Downstream 100 bases:

>100_bases
AGCCACCCCCGTCCAGGCTCACTGCGTGTAGCTTGTTCCCCCCTCTAGGGGGCGGCGCCTGCGGCCCGGCAAAGCCGGTT
CCGCGGCCCCCACTCGTGTG

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRSADNGAMLIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLADRHFGVGADQILSVRPSPGEGIDFEYVIHNADGGEV
EQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQADGRVTVDMGAPVFELARIPFDAAGLTAQPAGSWEKWPLTL
EDKALSATVSIAVLSMGNPHAVQLVDDVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGT
GACAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVPEL

Sequences:

>Translated_299_residues
MRSADNGAMLIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLADRHFGVGADQILSVRPSPGEGIDFEYVIHNADGGEV
EQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQADGRVTVDMGAPVFELARIPFDAAGLTAQPAGSWEKWPLTL
EDKALSATVSIAVLSMGNPHAVQLVDDVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGT
GACAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVPEL
>Mature_299_residues
MRSADNGAMLIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLADRHFGVGADQILSVRPSPGEGIDFEYVIHNADGGEV
EQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQADGRVTVDMGAPVFELARIPFDAAGLTAQPAGSWEKWPLTL
EDKALSATVSIAVLSMGNPHAVQLVDDVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGT
GACAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVPEL

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=286, Percent_Identity=50.6993006993007, Blast_Score=264, Evalue=5e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 32304; Mature: 32304

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSADNGAMLIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLADRHFGVGADQILSVRP
CCCCCCCEEEEEEEEECCCCCCEEEEECCCCEEEECHHHEEEEECCCCCCCHHHEEEECC
SPGEGIDFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQA
CCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCC
DGRVTVDMGAPVFELARIPFDAAGLTAQPAGSWEKWPLTLEDKALSATVSIAVLSMGNPH
CCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEECCCCC
AVQLVDDVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGT
EEEEEECCCCCCCCCCCCHHHHHHCCCHHCCHHHHHHHHCCCEEEEEEECCCCCEEECCC
GACAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVPEL
CHHHHHHHHHHHCEEEEEEEEEECCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCCC
>Mature Secondary Structure
MRSADNGAMLIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLADRHFGVGADQILSVRP
CCCCCCCEEEEEEEEECCCCCCEEEEECCCCEEEECHHHEEEEECCCCCCCHHHEEEECC
SPGEGIDFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQA
CCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCC
DGRVTVDMGAPVFELARIPFDAAGLTAQPAGSWEKWPLTLEDKALSATVSIAVLSMGNPH
CCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEECCCCC
AVQLVDDVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGT
EEEEEECCCCCCCCCCCCHHHHHHCCCHHCCHHHHHHHHCCCEEEEEEECCCCCEEECCC
GACAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVPEL
CHHHHHHHHHHHCEEEEEEEEEECCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA