Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is ubiE [H]
Identifier: 91786762
GI number: 91786762
Start: 883755
End: 884486
Strand: Direct
Name: ubiE [H]
Synonym: Bpro_0860
Alternate gene names: 91786762
Gene position: 883755-884486 (Clockwise)
Preceding gene: 91786761
Following gene: 91786763
Centisome position: 16.99
GC content: 57.65
Gene sequence:
>732_bases ATGACGAAAACCCATTTCGGCTTTGAATCCGTCGAGGAGCAGGACAAGGCGCGACGCGTGCGCGGCGTGTTTGACTCTGT GGCGCCCAAATACGACGTGATGAATGACTTGATGTCGATGGGTCTGCATCGTGCCTGGAAGGCCTACACCGTGCTGGTGG CCAACGTTAAGGAGGGCCAGCAGGTGCTCGACATCGCCGGCGGAACGGGCGACCTGGCCCTGGCTTTCGCGCCCAAAGTG GGCAGCAGCGGGCGGGTGGTGCACACTGACATCAACGAGGCGATGCTCAGGGAAGGGCGTAACCGGCTGCTGGACGCTGG TGTGAACCTGCCCACGTTGGTCTGTGATGCAGAACACCTGCCGTTTGCCGATGCGAGTTTTGACGTGGTCACCGTCGCTT TTGGCTTGCGCAACATGACGCATAAAGAAGATGCCTTGCGCGAAATGAACCGTGTGCTCAAGCCCGGTGGCAAACTGCTG GTGCTGGAGTTTTCCAAGGTGGCCAAACCGCTGGAAAAGATTTATGACTGGTATTCGTTCAAGGTGTTGCCCAGGCTCGG CAAGCTGGTGGCCAACGACGACTCAAGCTACCAGTACCTCGCCGAGTCGATTCGCATGCATCCGGGCCAGGAAGAACTCA AAGCCCTGATGCTTAAAGGTGGTTTCGGTCATGTGGACTATCACAACCTGACGGGCGGGGTAGTGGCATTGCATGTTGCA ATCAAATGCTGA
Upstream 100 bases:
>100_bases TCCTGGACTGTTGTTTTTCCGGCATAAAACCCCACAATGCCCTGAAGCAGTGCAGGGTTGTCGCCACTAACCAAGGGCAT TGCCCTCTAGCATTCACTCT
Downstream 100 bases:
>100_bases AGAAGTGTTGAAGAAGTTAAACCGGCTTAAATAAACAAACAGGCGCAAGGCTTGCTCAAGGAGACGTTATGAAGATTTGG TCAATCATTCTTTCCGCCGT
Product: 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/demethylmenaquinone methyltransferase
Products: S-Adenosyl-L-Homocysteine; @OCTA02.txt*2- Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol!; Menaquinol. [C]
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MTKTHFGFESVEEQDKARRVRGVFDSVAPKYDVMNDLMSMGLHRAWKAYTVLVANVKEGQQVLDIAGGTGDLALAFAPKV GSSGRVVHTDINEAMLREGRNRLLDAGVNLPTLVCDAEHLPFADASFDVVTVAFGLRNMTHKEDALREMNRVLKPGGKLL VLEFSKVAKPLEKIYDWYSFKVLPRLGKLVANDDSSYQYLAESIRMHPGQEELKALMLKGGFGHVDYHNLTGGVVALHVA IKC
Sequences:
>Translated_243_residues MTKTHFGFESVEEQDKARRVRGVFDSVAPKYDVMNDLMSMGLHRAWKAYTVLVANVKEGQQVLDIAGGTGDLALAFAPKV GSSGRVVHTDINEAMLREGRNRLLDAGVNLPTLVCDAEHLPFADASFDVVTVAFGLRNMTHKEDALREMNRVLKPGGKLL VLEFSKVAKPLEKIYDWYSFKVLPRLGKLVANDDSSYQYLAESIRMHPGQEELKALMLKGGFGHVDYHNLTGGVVALHVA IKC >Mature_242_residues TKTHFGFESVEEQDKARRVRGVFDSVAPKYDVMNDLMSMGLHRAWKAYTVLVANVKEGQQVLDIAGGTGDLALAFAPKVG SSGRVVHTDINEAMLREGRNRLLDAGVNLPTLVCDAEHLPFADASFDVVTVAFGLRNMTHKEDALREMNRVLKPGGKLLV LEFSKVAKPLEKIYDWYSFKVLPRLGKLVANDDSSYQYLAESIRMHPGQEELKALMLKGGFGHVDYHNLTGGVVALHVAI KC
Specific function: Methyltransferase required for the conversion of dimethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) [H]
COG id: COG2226
COG function: function code H; Methylase involved in ubiquinone/menaquinone biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. UbiE family [H]
Homologues:
Organism=Homo sapiens, GI116063536, Length=277, Percent_Identity=45.4873646209386, Blast_Score=236, Evalue=2e-62, Organism=Escherichia coli, GI48994983, Length=242, Percent_Identity=60.3305785123967, Blast_Score=292, Evalue=2e-80, Organism=Caenorhabditis elegans, GI17557039, Length=244, Percent_Identity=47.1311475409836, Blast_Score=223, Evalue=6e-59, Organism=Saccharomyces cerevisiae, GI6323526, Length=256, Percent_Identity=40.234375, Blast_Score=173, Evalue=2e-44, Organism=Drosophila melanogaster, GI24641702, Length=255, Percent_Identity=43.1372549019608, Blast_Score=212, Evalue=2e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004033 [H]
Pfam domain/function: PF01209 Ubie_methyltran [H]
EC number: 2.1.1.- [C]
Molecular weight: Translated: 26870; Mature: 26739
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: PS01183 UBIE_1 ; PS01184 UBIE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTHFGFESVEEQDKARRVRGVFDSVAPKYDVMNDLMSMGLHRAWKAYTVLVANVKEGQ CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCC QVLDIAGGTGDLALAFAPKVGSSGRVVHTDINEAMLREGRNRLLDAGVNLPTLVCDAEHL EEEEECCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCC PFADASFDVVTVAFGLRNMTHKEDALREMNRVLKPGGKLLVLEFSKVAKPLEKIYDWYSF CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHH KVLPRLGKLVANDDSSYQYLAESIRMHPGQEELKALMLKGGFGHVDYHNLTGGVVALHVA HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE IKC EEC >Mature Secondary Structure TKTHFGFESVEEQDKARRVRGVFDSVAPKYDVMNDLMSMGLHRAWKAYTVLVANVKEGQ CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCC QVLDIAGGTGDLALAFAPKVGSSGRVVHTDINEAMLREGRNRLLDAGVNLPTLVCDAEHL EEEEECCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCC PFADASFDVVTVAFGLRNMTHKEDALREMNRVLKPGGKLLVLEFSKVAKPLEKIYDWYSF CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHH KVLPRLGKLVANDDSSYQYLAESIRMHPGQEELKALMLKGGFGHVDYHNLTGGVVALHVA HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE IKC EEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: S-Adenosyl-L-Methionine; 2-Polyprenyl-6- Methoxy-1,4-Benzoquinol; Demethylmenaquinol [C]
Specific reaction: S-Adenosyl-L-Methionine + @OCTA02.txt*2-Polyprenyl-6- Methoxy-1,4-Benzoquinol! = S-Adenosyl-L-Homocysteine + 2- Polyprenyl-3-Methyl-6-Methoxy -1,4-Benzoquinol S-Adenosyl-L-Methionine + Demethylmenaquinol = S-Adenosyl-L-Homocysteine + Menaquinol. [C]
General reaction: Transferring one-carbon groups; Methyltransferases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA