Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91786685
Identifier: 91786685
GI number: 91786685
Start: 805662
End: 806336
Strand: Direct
Name: 91786685
Synonym: Bpro_0783
Alternate gene names: NA
Gene position: 805662-806336 (Clockwise)
Preceding gene: 91786684
Following gene: 91786686
Centisome position: 15.49
GC content: 55.85
Gene sequence:
>675_bases ATGGCAAAAAAACCAAAATCTTCTGTCGATTTCGGCGGTATTCAACGCAGCCTGAAAGCCCAGTTCAGCGGGCTGGATCC GAATGATCCAACCTCGTGGCCGGCTTTGCCGCGCTTCCTGCTATGCCTTGCCGTTACGGTGCTGGTGGTCGTTGCCATCT GGTTTTTAGGCTTGAACGCCTCTGACGAAGAGTTGACGGCGGAAAAAGCAAAAGAAGTTCAGCTCAGGGACGACTACAAG AAGAAGCTTGTGCAGGCCGTCAATCTGGAGGCCCTGAAGAAACAGCGTGAACAGGTCCAGCAATACGTGACGCAGCTTGA AAAGCAGCTGCCCAGCAAAGCTGAGATGGATGCCCTGCTGTCTGATATCAATCAGGCCGGACTGGGGCGCAGCCTGCAGT TTGAGTTGTTTCGCCCGGGTCAGGTGAGCGTCAGGGAGTATTACGCGGAATTGCCGATTGCGGTGCGCGTGTCGGGGCGC TATCACGATCTTGGCGCGTTTGCGGCGGATATTGCCAATCTGTCCCGTATCGTCACCCTGAACAATCTGAGTATCCTGCC GGCCAAGGATGGCAATCTGACAATGGATACCACGGCCAAGACTTTCCGTTACCTCGACGGTGACGAGGTGGCCTTGCAGC GCAAGAGCGCTCCCGCCAAGGGGGCCAAGAAATGA
Upstream 100 bases:
>100_bases GCGCTTCCTGCGGCGTCTTCTGCCGTAGCCAAGCCAGCTCCCGTCGCCTCGGCGTCGGCAGCGGCCAAGATATGAAGACC AAGGTTGAACGAGACTGATC
Downstream 100 bases:
>100_bases GACTCAATCGCCCTGCATTGATCGTCAGTTTGACGCTGGTTTTTCTCGGAATGGCCGGTTGCAGTTCTTCCGAACAGGAA GAACTGCAGCAGTGGATGGT
Product: pilus assembly protein PilO
Products: NA
Alternate protein names: Type IV Pilus Biogenesis Protein PilO; Type 4 Fimbrial Biogenesis Protein PilO; Type IV Pilus Assembly Protein PilO; Fimbrial Assembly Membrane Protein; Fimbrial Assembly Protein PilO; Tfp Pilus Assembly Protein PilO; Pilus Assembly Protein; Fimbrial Type-4 Assembly Transmembrane Protein; Fimbrial Type-4 Assembly Membrane Transmembrane Protein; Type IV Pilus Assembly Membrane Transmembrane Protein; Pilo Protein; Pilus Assembly Protein Pilo; PilO Type IV Pilus Assembly Protein; Fimbriae Biogenesis-Related Fusion Protein; Fimbrial Type-IV Assembly Protein PilO; Fimbrial Assembly Protein; Pili Assembly Protein PilO; Pilus Iv Assembly Membrane Protein Pilo; Type 4 Fimbrial Biogenesis Protein; Pilus Assembly Protein PilO-Like
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MAKKPKSSVDFGGIQRSLKAQFSGLDPNDPTSWPALPRFLLCLAVTVLVVVAIWFLGLNASDEELTAEKAKEVQLRDDYK KKLVQAVNLEALKKQREQVQQYVTQLEKQLPSKAEMDALLSDINQAGLGRSLQFELFRPGQVSVREYYAELPIAVRVSGR YHDLGAFAADIANLSRIVTLNNLSILPAKDGNLTMDTTAKTFRYLDGDEVALQRKSAPAKGAKK
Sequences:
>Translated_224_residues MAKKPKSSVDFGGIQRSLKAQFSGLDPNDPTSWPALPRFLLCLAVTVLVVVAIWFLGLNASDEELTAEKAKEVQLRDDYK KKLVQAVNLEALKKQREQVQQYVTQLEKQLPSKAEMDALLSDINQAGLGRSLQFELFRPGQVSVREYYAELPIAVRVSGR YHDLGAFAADIANLSRIVTLNNLSILPAKDGNLTMDTTAKTFRYLDGDEVALQRKSAPAKGAKK >Mature_223_residues AKKPKSSVDFGGIQRSLKAQFSGLDPNDPTSWPALPRFLLCLAVTVLVVVAIWFLGLNASDEELTAEKAKEVQLRDDYKK KLVQAVNLEALKKQREQVQQYVTQLEKQLPSKAEMDALLSDINQAGLGRSLQFELFRPGQVSVREYYAELPIAVRVSGRY HDLGAFAADIANLSRIVTLNNLSILPAKDGNLTMDTTAKTFRYLDGDEVALQRKSAPAKGAKK
Specific function: Unknown
COG id: COG3167
COG function: function code NU; Tfp pilus assembly protein PilO
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24792; Mature: 24661
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKPKSSVDFGGIQRSLKAQFSGLDPNDPTSWPALPRFLLCLAVTVLVVVAIWFLGLNA CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC SDEELTAEKAKEVQLRDDYKKKLVQAVNLEALKKQREQVQQYVTQLEKQLPSKAEMDALL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH SDINQAGLGRSLQFELFRPGQVSVREYYAELPIAVRVSGRYHDLGAFAADIANLSRIVTL HHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHEEEE NNLSILPAKDGNLTMDTTAKTFRYLDGDEVALQRKSAPAKGAKK CCEEEEECCCCCEEECCHHHHHHHCCCCHHHHHHCCCCCCCCCC >Mature Secondary Structure AKKPKSSVDFGGIQRSLKAQFSGLDPNDPTSWPALPRFLLCLAVTVLVVVAIWFLGLNA CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC SDEELTAEKAKEVQLRDDYKKKLVQAVNLEALKKQREQVQQYVTQLEKQLPSKAEMDALL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH SDINQAGLGRSLQFELFRPGQVSVREYYAELPIAVRVSGRYHDLGAFAADIANLSRIVTL HHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHEEEE NNLSILPAKDGNLTMDTTAKTFRYLDGDEVALQRKSAPAKGAKK CCEEEEECCCCCEEECCHHHHHHHCCCCHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA