Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91786686
Identifier: 91786686
GI number: 91786686
Start: 806333
End: 806884
Strand: Direct
Name: 91786686
Synonym: Bpro_0784
Alternate gene names: NA
Gene position: 806333-806884 (Clockwise)
Preceding gene: 91786685
Following gene: 91786687
Centisome position: 15.51
GC content: 56.34
Gene sequence:
>552_bases ATGAGACTCAATCGCCCTGCATTGATCGTCAGTTTGACGCTGGTTTTTCTCGGAATGGCCGGTTGCAGTTCTTCCGAACA GGAAGAACTGCAGCAGTGGATGGTGGATCAGCGAAACGCAACCAAGCCCAAGGTTGATCCTTTGCCGGAGCCCACCAAGT TCACGCCGCAAGCCTATAACCAGGAAGGTTCAATAGAGCCTTTCAGCAACCAGAAACTGACACAGGCCTTGAAGCGCGAA TCCAATCGGGGGACGGCCAACGCGGCCCTGGTAGCCCCTGAGCTAAGCCGGCGCAAAGAACCGCTGGAGTCGTCCCCTCT GGACGCCGTGGTCATGGTCGGCAGCCTGATCAAGGTCGGCTTGCCTGTGGCACTGGTGCGGGTCGACAACCTCATTTACC AAGTCCGTGCGGGTAACTATCTGGGCCAGAACTACGGCCGTATTACCAAGGTGACCGAAACAAGTATTGCCCTGCGGGAA ATCGTGCAGGACGCGGCGGGCGAATGGATAGAGCGGCCAGCGACATTACAGTTATTAGAGGGATCAAAATGA
Upstream 100 bases:
>100_bases GCAATCTGACAATGGATACCACGGCCAAGACTTTCCGTTACCTCGACGGTGACGAGGTGGCCTTGCAGCGCAAGAGCGCT CCCGCCAAGGGGGCCAAGAA
Downstream 100 bases:
>100_bases ACAAGCAGACATTGGCATCAAAGGCAGGGGCGATGCGAGGCGGCCTGCAACGTTTGCTTGGATGCGTGCTGCGTGGCGCT TCCCTGAGTGTGGCGCTGAT
Product: pilus assembly protein PilQ
Products: NA
Alternate protein names: Pilus Assembly Protein PilQ; Type 4 Fimbrial Biogenesis Protein PilP; Type IV Pilus Biogenesis Protein PilP; Type IV Pilus Assembly Protein PilP; Tfp Pilus Assembly Protein PilP; Fimbrial Assembly Protein; Lipoprotein; Pilus Assembly Protein; Type IV Pilus Assembly Protein Pilp; Pilus Assembly Protein Pilp; Fimbrial Type-4 Assembly Lipoprotein; Type IV Fimbrial Biogenesis Protein PilP; Type 4 Fimbrial Biogenesis Protein; Fimbrial Assembly Protein PilP; Methyl-Accepting Chemotaxis Sensory Transducer; Type IV Pilus Assembly Protein
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MRLNRPALIVSLTLVFLGMAGCSSSEQEELQQWMVDQRNATKPKVDPLPEPTKFTPQAYNQEGSIEPFSNQKLTQALKRE SNRGTANAALVAPELSRRKEPLESSPLDAVVMVGSLIKVGLPVALVRVDNLIYQVRAGNYLGQNYGRITKVTETSIALRE IVQDAAGEWIERPATLQLLEGSK
Sequences:
>Translated_183_residues MRLNRPALIVSLTLVFLGMAGCSSSEQEELQQWMVDQRNATKPKVDPLPEPTKFTPQAYNQEGSIEPFSNQKLTQALKRE SNRGTANAALVAPELSRRKEPLESSPLDAVVMVGSLIKVGLPVALVRVDNLIYQVRAGNYLGQNYGRITKVTETSIALRE IVQDAAGEWIERPATLQLLEGSK >Mature_183_residues MRLNRPALIVSLTLVFLGMAGCSSSEQEELQQWMVDQRNATKPKVDPLPEPTKFTPQAYNQEGSIEPFSNQKLTQALKRE SNRGTANAALVAPELSRRKEPLESSPLDAVVMVGSLIKVGLPVALVRVDNLIYQVRAGNYLGQNYGRITKVTETSIALRE IVQDAAGEWIERPATLQLLEGSK
Specific function: Unknown
COG id: COG3168
COG function: function code NU; Tfp pilus assembly protein PilP
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20172; Mature: 20172
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLNRPALIVSLTLVFLGMAGCSSSEQEELQQWMVDQRNATKPKVDPLPEPTKFTPQAYN CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC QEGSIEPFSNQKLTQALKRESNRGTANAALVAPELSRRKEPLESSPLDAVVMVGSLIKVG CCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHC LPVALVRVDNLIYQVRAGNYLGQNYGRITKVTETSIALREIVQDAAGEWIERPATLQLLE CHHHHHHHHHHHHHHHCCCHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC GSK CCC >Mature Secondary Structure MRLNRPALIVSLTLVFLGMAGCSSSEQEELQQWMVDQRNATKPKVDPLPEPTKFTPQAYN CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC QEGSIEPFSNQKLTQALKRESNRGTANAALVAPELSRRKEPLESSPLDAVVMVGSLIKVG CCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHC LPVALVRVDNLIYQVRAGNYLGQNYGRITKVTETSIALREIVQDAAGEWIERPATLQLLE CHHHHHHHHHHHHHHHCCCHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC GSK CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA