Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is ccsB [H]
Identifier: 91786675
GI number: 91786675
Start: 793635
End: 795854
Strand: Direct
Name: ccsB [H]
Synonym: Bpro_0773
Alternate gene names: 91786675
Gene position: 793635-795854 (Clockwise)
Preceding gene: 91786674
Following gene: 91786676
Centisome position: 15.26
GC content: 63.29
Gene sequence:
>2220_bases ATGACAGTTTCCACCCAAGGCATGAAAGTTCATTGGGGCTCCCGCTCCCTGCGGGCGTCCGTGGAGTTGCTGTCGTCCAT GCGGTTTTCCATCTCGCTGCTGACCGTCATCTGCATTGCTTCGGTCATTGGCACGGTGCTCAAGCAGCAGGAGCCGCTGG GCAATTACGTGAACCAGTTCGGGCCGTTCTGGGCGCAGGTGTTCAGCCTGGTCAGCCTGAACACGGTCTACAGCGCCTGG TGGTTTTTGCTGATTCTGGCTTTTCTGGTCACCAGCACCAGCCTGTGCATTGCCCGCAACGCGCCAAAAATCCTGGCCGA CCTGAATCACCTCAAGGAAAACGTCCGCGAACAAAGCCTGAAGGCCTTTGGCCACCGCGCCGAGGGGGCCTTGTCCGAGG CGCCCGAGGCGGCCGCCCGGCGCATTGGCCAGACGCTGGTGCAAAGCGGCTGGAAGGTGAAACTGCAGCACAGGCCATCG TCTGGCGGCTGGATGGTGGCCGCCAAAAAAGGCGCGGCCAACAAACTGGGGTACATCGCGGCACACAGCGCCATTGTGCT GGTGTGCGTGGGCGGCCTGCTCGATGGCGACATGGTGGTGCGCGCGCAGATGTGGCTGGGCGGCAAGTCCACCTACACCG GCGGCGGGTTGATTGCCGACGTGCCGGCCCAGCACCGCCTGAGTGACCGCAACCCGACCTTTCGGGGCAACCTCCTGGTG GCCGAAGGTACGCAATCGGGCACCGCCATCCTGAACCAGCCGGGCGGGGTGCTGTTGCAGGAGCTGCCGTTTGCGATCGA GTTGAAGAAGTTCATCGTCGAGTACTACTCCACCGGCATGCCCAAGCTGTTTGCCAGCGACATCATCATTCATGACAGGG AAACCGGCGAAAAGATTCCGGCACGGGTGGAAGTCAATCACCCGGCACGCCACAAGGGCATAGAGATCTACCAGTCCAGC TTTGACGACGGCGGCTCCAGTGTCACGCTCAAGGCGATTCCGCTGGCCCCCACGGCCAAGGCGTTTGAGATCCAGGGCAC GATTGGCGGCGCCAGCAGCCTGACCAATGGCGCGGACAAGCTGACACTCGAGTACACCGGGCTGCGTGTCATCAACGTGG AAAATTTCGCGTCCGCCAGCACCTTGGGGGCGGGCTCGGGGGTGGATGTGCGCAAGGTTGACCTGCACCAGGCCATTGAC ACGCGGCTGGGGGCGGCCAACAAGACGGTGACCCGCAAGGATCTGCGCAACATCGGCCCCAGCGTGAGCTACAAGCTGCG CGATGCCGCGGGCCAGGCCCGTGAATTCAACAACTACATGCTGCCCGTCAAGATGGACGACGGCACGGACAGCCCGGCGG TGTACCTGTTGGGTGTGCGCGAAACGCCGGCCGACCCATTTCAGTACCTGCGCATTCCCGTGGACGCGGAAGGCAGCATG GACACCTTTTTGCGCTTGCGCGCCGCGCTGGCCGATCCGGTGCAGCGCGAACTGGCCGTCAAGCGTTATGCCAGCCAAGC GATTGGCGCCGACCGGCCGGAACTGGCGCAGCAGCTGACGGCGTCGGCCTCGCGCGCGCTGGCCCTGTTTGCGGGGGCTG GGCCTGATGGCGCGCCGTCGGGCAATGCCAAAACGCCGGCCGGCCTGCAGGCCATCTCCGACTTCATGGAAGCGAATGTG CCCGAGGCCGAGCGCAACCGCGCGGGCGAGGTGCTGATCCGCATCCTCAATGGCGTGCTGTTTGAGCTGACCCAGATGAC GCGAGCGAAAAACGGCCTCAAGCCGCTGGCGCAGGACGACAAGACGCAGGGGTTCATGTCCCAGATGGTGCTCAGCCTGT CGGATGCCCATCACTATCCGGCCCCCATGGCCTTTGTGCTGAAAGACTTCACCCAGGTGCAGGCCAGCGTGTTTCAGGTT GCCCGGGCGCCGGGCAGGAATATTGTCTACCTGGGCTGTGCCTTCCTGATCCTGGGGGTGTTCGCCATGCTGTACGTGCG GGAGCGCCGGGTCTGGGTCTGGCTGGCCCCGGGTGGCGGGAATTCAGGTCATTCGGACAATTCGGGTCATTCCGGCGAGG GCAGCGGTTTGGCGCATTCAGTGCCAGAATCAGGCACCAGCAGCCTCGCCACGATGGCCTTGTCCACCAACCGCAAAACC ATGGATGGCGACAAGGAGTTTGAGATGTTGAAAATGAAACTGTTGCAGGCGCCTTTATGA
Upstream 100 bases:
>100_bases GCCTCCAAAACCAATCACACCATGGCGGGTCTTTCTGATGAAAGTCCCGCCTTTTTCTTTTTGTTGACCTTCTGACCCGG CACACGGCCCCATTTCACGC
Downstream 100 bases:
>100_bases ACACCCCCTCTGGTTACACCGCAGCCGTCAACACCACCACGCTGACGGCGGGGCGTCGTTCGGGGCAAGACAGTACGCTC GACCTGAATGAAGGCTATTT
Product: ResB-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 739; Mature: 738
Protein sequence:
>739_residues MTVSTQGMKVHWGSRSLRASVELLSSMRFSISLLTVICIASVIGTVLKQQEPLGNYVNQFGPFWAQVFSLVSLNTVYSAW WFLLILAFLVTSTSLCIARNAPKILADLNHLKENVREQSLKAFGHRAEGALSEAPEAAARRIGQTLVQSGWKVKLQHRPS SGGWMVAAKKGAANKLGYIAAHSAIVLVCVGGLLDGDMVVRAQMWLGGKSTYTGGGLIADVPAQHRLSDRNPTFRGNLLV AEGTQSGTAILNQPGGVLLQELPFAIELKKFIVEYYSTGMPKLFASDIIIHDRETGEKIPARVEVNHPARHKGIEIYQSS FDDGGSSVTLKAIPLAPTAKAFEIQGTIGGASSLTNGADKLTLEYTGLRVINVENFASASTLGAGSGVDVRKVDLHQAID TRLGAANKTVTRKDLRNIGPSVSYKLRDAAGQAREFNNYMLPVKMDDGTDSPAVYLLGVRETPADPFQYLRIPVDAEGSM DTFLRLRAALADPVQRELAVKRYASQAIGADRPELAQQLTASASRALALFAGAGPDGAPSGNAKTPAGLQAISDFMEANV PEAERNRAGEVLIRILNGVLFELTQMTRAKNGLKPLAQDDKTQGFMSQMVLSLSDAHHYPAPMAFVLKDFTQVQASVFQV ARAPGRNIVYLGCAFLILGVFAMLYVRERRVWVWLAPGGGNSGHSDNSGHSGEGSGLAHSVPESGTSSLATMALSTNRKT MDGDKEFEMLKMKLLQAPL
Sequences:
>Translated_739_residues MTVSTQGMKVHWGSRSLRASVELLSSMRFSISLLTVICIASVIGTVLKQQEPLGNYVNQFGPFWAQVFSLVSLNTVYSAW WFLLILAFLVTSTSLCIARNAPKILADLNHLKENVREQSLKAFGHRAEGALSEAPEAAARRIGQTLVQSGWKVKLQHRPS SGGWMVAAKKGAANKLGYIAAHSAIVLVCVGGLLDGDMVVRAQMWLGGKSTYTGGGLIADVPAQHRLSDRNPTFRGNLLV AEGTQSGTAILNQPGGVLLQELPFAIELKKFIVEYYSTGMPKLFASDIIIHDRETGEKIPARVEVNHPARHKGIEIYQSS FDDGGSSVTLKAIPLAPTAKAFEIQGTIGGASSLTNGADKLTLEYTGLRVINVENFASASTLGAGSGVDVRKVDLHQAID TRLGAANKTVTRKDLRNIGPSVSYKLRDAAGQAREFNNYMLPVKMDDGTDSPAVYLLGVRETPADPFQYLRIPVDAEGSM DTFLRLRAALADPVQRELAVKRYASQAIGADRPELAQQLTASASRALALFAGAGPDGAPSGNAKTPAGLQAISDFMEANV PEAERNRAGEVLIRILNGVLFELTQMTRAKNGLKPLAQDDKTQGFMSQMVLSLSDAHHYPAPMAFVLKDFTQVQASVFQV ARAPGRNIVYLGCAFLILGVFAMLYVRERRVWVWLAPGGGNSGHSDNSGHSGEGSGLAHSVPESGTSSLATMALSTNRKT MDGDKEFEMLKMKLLQAPL >Mature_738_residues TVSTQGMKVHWGSRSLRASVELLSSMRFSISLLTVICIASVIGTVLKQQEPLGNYVNQFGPFWAQVFSLVSLNTVYSAWW FLLILAFLVTSTSLCIARNAPKILADLNHLKENVREQSLKAFGHRAEGALSEAPEAAARRIGQTLVQSGWKVKLQHRPSS GGWMVAAKKGAANKLGYIAAHSAIVLVCVGGLLDGDMVVRAQMWLGGKSTYTGGGLIADVPAQHRLSDRNPTFRGNLLVA EGTQSGTAILNQPGGVLLQELPFAIELKKFIVEYYSTGMPKLFASDIIIHDRETGEKIPARVEVNHPARHKGIEIYQSSF DDGGSSVTLKAIPLAPTAKAFEIQGTIGGASSLTNGADKLTLEYTGLRVINVENFASASTLGAGSGVDVRKVDLHQAIDT RLGAANKTVTRKDLRNIGPSVSYKLRDAAGQAREFNNYMLPVKMDDGTDSPAVYLLGVRETPADPFQYLRIPVDAEGSMD TFLRLRAALADPVQRELAVKRYASQAIGADRPELAQQLTASASRALALFAGAGPDGAPSGNAKTPAGLQAISDFMEANVP EAERNRAGEVLIRILNGVLFELTQMTRAKNGLKPLAQDDKTQGFMSQMVLSLSDAHHYPAPMAFVLKDFTQVQASVFQVA RAPGRNIVYLGCAFLILGVFAMLYVRERRVWVWLAPGGGNSGHSDNSGHSGEGSGLAHSVPESGTSSLATMALSTNRKTM DGDKEFEMLKMKLLQAPL
Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]
COG id: COG1333
COG function: function code O; ResB protein required for cytochrome c biosynthesis
Gene ontology:
Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ccs1/ccsB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007816 [H]
Pfam domain/function: PF05140 ResB [H]
EC number: NA
Molecular weight: Translated: 79444; Mature: 79313
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSTQGMKVHWGSRSLRASVELLSSMRFSISLLTVICIASVIGTVLKQQEPLGNYVNQF CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH GPFWAQVFSLVSLNTVYSAWWFLLILAFLVTSTSLCIARNAPKILADLNHLKENVREQSL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHH KAFGHRAEGALSEAPEAAARRIGQTLVQSGWKVKLQHRPSSGGWMVAAKKGAANKLGYIA HHHCCCCCCCHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCHHHHHH AHSAIVLVCVGGLLDGDMVVRAQMWLGGKSTYTGGGLIADVPAQHRLSDRNPTFRGNLLV HHHHHHHHHHHCCCCCCEEEEEEEHCCCCCCCCCCCEEECCCCHHCCCCCCCCEECCEEE AEGTQSGTAILNQPGGVLLQELPFAIELKKFIVEYYSTGMPKLFASDIIIHDRETGEKIP EECCCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCCCCC ARVEVNHPARHKGIEIYQSSFDDGGSSVTLKAIPLAPTAKAFEIQGTIGGASSLTNGADK CEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCHHCCCCCCE LTLEYTGLRVINVENFASASTLGAGSGVDVRKVDLHQAIDTRLGAANKTVTRKDLRNIGP EEEEECCEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCC SVSYKLRDAAGQAREFNNYMLPVKMDDGTDSPAVYLLGVRETPADPFQYLRIPVDAEGSM CCEEEEHHHCCHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHHEEEEECCCCCCH DTFLRLRAALADPVQRELAVKRYASQAIGADRPELAQQLTASASRALALFAGAGPDGAPS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCC GNAKTPAGLQAISDFMEANVPEAERNRAGEVLIRILNGVLFELTQMTRAKNGLKPLAQDD CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC KTQGFMSQMVLSLSDAHHYPAPMAFVLKDFTQVQASVFQVARAPGRNIVYLGCAFLILGV HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH FAMLYVRERRVWVWLAPGGGNSGHSDNSGHSGEGSGLAHSVPESGTSSLATMALSTNRKT HHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEECCCCC MDGDKEFEMLKMKLLQAPL CCCCHHHHHHHHHHHHCCC >Mature Secondary Structure TVSTQGMKVHWGSRSLRASVELLSSMRFSISLLTVICIASVIGTVLKQQEPLGNYVNQF CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH GPFWAQVFSLVSLNTVYSAWWFLLILAFLVTSTSLCIARNAPKILADLNHLKENVREQSL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHH KAFGHRAEGALSEAPEAAARRIGQTLVQSGWKVKLQHRPSSGGWMVAAKKGAANKLGYIA HHHCCCCCCCHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCHHHHHH AHSAIVLVCVGGLLDGDMVVRAQMWLGGKSTYTGGGLIADVPAQHRLSDRNPTFRGNLLV HHHHHHHHHHHCCCCCCEEEEEEEHCCCCCCCCCCCEEECCCCHHCCCCCCCCEECCEEE AEGTQSGTAILNQPGGVLLQELPFAIELKKFIVEYYSTGMPKLFASDIIIHDRETGEKIP EECCCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCCCCC ARVEVNHPARHKGIEIYQSSFDDGGSSVTLKAIPLAPTAKAFEIQGTIGGASSLTNGADK CEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCHHCCCCCCE LTLEYTGLRVINVENFASASTLGAGSGVDVRKVDLHQAIDTRLGAANKTVTRKDLRNIGP EEEEECCEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCC SVSYKLRDAAGQAREFNNYMLPVKMDDGTDSPAVYLLGVRETPADPFQYLRIPVDAEGSM CCEEEEHHHCCHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHHEEEEECCCCCCH DTFLRLRAALADPVQRELAVKRYASQAIGADRPELAQQLTASASRALALFAGAGPDGAPS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCC GNAKTPAGLQAISDFMEANVPEAERNRAGEVLIRILNGVLFELTQMTRAKNGLKPLAQDD CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC KTQGFMSQMVLSLSDAHHYPAPMAFVLKDFTQVQASVFQVARAPGRNIVYLGCAFLILGV HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH FAMLYVRERRVWVWLAPGGGNSGHSDNSGHSGEGSGLAHSVPESGTSSLATMALSTNRKT HHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEECCCCC MDGDKEFEMLKMKLLQAPL CCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA