Definition Escherichia coli UTI89 plasmid pUTI89, complete sequence.
Accession NC_007941
Length 114,230

Click here to switch to the map view.

The map label for this gene is trbA [H]

Identifier: 91206371

GI number: 91206371

Start: 94474

End: 94815

Strand: Direct

Name: trbA [H]

Synonym: UTI89_P126

Alternate gene names: 91206371

Gene position: 94474-94815 (Clockwise)

Preceding gene: 91206370

Following gene: 91206373

Centisome position: 82.71

GC content: 38.3

Gene sequence:

>342_bases
ATGCATACAGGGGATTTGTGTTTTTTTACAGGTGCCAGCCTGTTTATCGTGGGGGTTGTTGGTTATTTCTTTACAGGACC
AAATAATAAAGGAGTTTATCTGCTGAGCTCGTTTATCTTCTTTGTAGTAAATGTCATAAGTGTATGTATGCTGCCAGATA
ATTTCTTGTTTCTTTGTGGTGCGGTTATGAATCAGTGTGCCGTACCGGTTGTTTCAATGGCAGTCAGTACCATACCGGTT
ATCACGAAGTTTGACAGTTTCAGAAGGATGTTTGTTTGTATTATGTTGTCAGCCATATGGTCTGGAGTGATGTGGTTTTT
TATTATTTCATTAGTGAAATGA

Upstream 100 bases:

>100_bases
CGCCCGTTATCATACGGCTTTATTTCACAGGACGACCTGGCAAAACAGTTCCTGAACGTTTCTGAAGATTTTAAACCGAA
TTTTTAACCAAAGGTTATAT

Downstream 100 bases:

>100_bases
CTGGTGCTAATTTGTCATAAATGCCAAATCCAATAGTGAGGTTGATTACCACAGACCAGAGGATAAACCAGACTGCTATC
CAGTGACTTCTGAATAACTC

Product: conjugal transfer protein TrbA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MHTGDLCFFTGASLFIVGVVGYFFTGPNNKGVYLLSSFIFFVVNVISVCMLPDNFLFLCGAVMNQCAVPVVSMAVSTIPV
ITKFDSFRRMFVCIMLSAIWSGVMWFFIISLVK

Sequences:

>Translated_113_residues
MHTGDLCFFTGASLFIVGVVGYFFTGPNNKGVYLLSSFIFFVVNVISVCMLPDNFLFLCGAVMNQCAVPVVSMAVSTIPV
ITKFDSFRRMFVCIMLSAIWSGVMWFFIISLVK
>Mature_113_residues
MHTGDLCFFTGASLFIVGVVGYFFTGPNNKGVYLLSSFIFFVVNVISVCMLPDNFLFLCGAVMNQCAVPVVSMAVSTIPV
ITKFDSFRRMFVCIMLSAIWSGVMWFFIISLVK

Specific function: Unknown. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016385 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12535; Mature: 12535

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTGDLCFFTGASLFIVGVVGYFFTGPNNKGVYLLSSFIFFVVNVISVCMLPDNFLFLCG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AVMNQCAVPVVSMAVSTIPVITKFDSFRRMFVCIMLSAIWSGVMWFFIISLVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MHTGDLCFFTGASLFIVGVVGYFFTGPNNKGVYLLSSFIFFVVNVISVCMLPDNFLFLCG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AVMNQCAVPVVSMAVSTIPVITKFDSFRRMFVCIMLSAIWSGVMWFFIISLVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2536655; 7915817 [H]