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The map label for this gene is ygbT [H]

Identifier: 89885834

GI number: 89885834

Start: 111367

End: 112200

Strand: Reverse

Name: ygbT [H]

Synonym: Rfer_4348

Alternate gene names: 89885834

Gene position: 112200-111367 (Counterclockwise)

Preceding gene: 89885835

Following gene: 89885828

Centisome position: 43.58

GC content: 50.24

Gene sequence:

>834_bases
ATGAGTTTCGATATGCCCTTTCGTGTTCCTGCACCAGTTCGCATGGCGCACAAGAACAGAATTCCATATCTATTTTTGGA
GAAGGGAATTCTGCGCGTCGATGGGCATTGCTTATTGTTATGCCAAGCAGAGTCTGCCATCGAAATACCTGGCTCGATGG
TGTCATGTCTGATGATCGAGCCGGGCGTGAGCGTTACGCATGAAGCGATGAAGCTTTGCGGAGAAAATGGCACACTGCTG
ATGTGGGTAGGAGAAGGTGGAACCCGGTTTTACGCGGCTGCGCACGCACACCAAGATGCGTCAAGAGTTTTACGCCAGGC
AGCAATCCACACTAACCAACGGGAGCGAATTGCTGCAGCGTCCCGGCTTTATGGGCTCATGTTTGATGACCACATGCCTC
CAAGTTTTACCATCGAGAAGTTGAGGGGGCTAGAAGGATCGCGGGTGAAAGAGATTTACGTGAATCTGGCCGATAAACTT
GGAATGGTCTGGCAAGGCAGAGAGGAAAAATCAGCCCTGAATACAAGCATCGGATTTGCCACCAGTTGCTTGTATGCGCT
CTGCGAAGTAGCCATTCTTGCAGCGGGATACCATCCTGGCATCGGCGTAGTGCATAGCGGGAACCCGAGATCATTGGTGT
TTGATTTAGCCGATACGGTGAAGTTTAAGACGGTAGTACCGCTGGCGTTTGAGATAGCAGCTACCAGTCCGTCCAACCTG
AACATGGCTGTTCGGCATGGTTGTCGGGATTTGTTCTCTAGGGAAAGCATGTTTGAAACACTGCTTGGACATCTTGAAAA
TATCTTTGGGACGGATCATGATTGTCACGATTAG

Upstream 100 bases:

>100_bases
TTGGGTATGCTGGCCCATTGATTCTTTTAGTGCATGCTTGTGATCGGATAATCATGCATAAGTTCTTTACCACTGCAAGT
CAAAGTGTAGGGTCATCGAT

Downstream 100 bases:

>100_bases
TCTGGTTGGACCCAGTACATCTGTGCGCGGCATGTTGCGGAACCTTTTCCTAGAACCTCAGGCACATCTGTTTGTAGGGT
CCGTCAACACAAAGCAACTG

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MSFDMPFRVPAPVRMAHKNRIPYLFLEKGILRVDGHCLLLCQAESAIEIPGSMVSCLMIEPGVSVTHEAMKLCGENGTLL
MWVGEGGTRFYAAAHAHQDASRVLRQAAIHTNQRERIAAASRLYGLMFDDHMPPSFTIEKLRGLEGSRVKEIYVNLADKL
GMVWQGREEKSALNTSIGFATSCLYALCEVAILAAGYHPGIGVVHSGNPRSLVFDLADTVKFKTVVPLAFEIAATSPSNL
NMAVRHGCRDLFSRESMFETLLGHLENIFGTDHDCHD

Sequences:

>Translated_277_residues
MSFDMPFRVPAPVRMAHKNRIPYLFLEKGILRVDGHCLLLCQAESAIEIPGSMVSCLMIEPGVSVTHEAMKLCGENGTLL
MWVGEGGTRFYAAAHAHQDASRVLRQAAIHTNQRERIAAASRLYGLMFDDHMPPSFTIEKLRGLEGSRVKEIYVNLADKL
GMVWQGREEKSALNTSIGFATSCLYALCEVAILAAGYHPGIGVVHSGNPRSLVFDLADTVKFKTVVPLAFEIAATSPSNL
NMAVRHGCRDLFSRESMFETLLGHLENIFGTDHDCHD
>Mature_276_residues
SFDMPFRVPAPVRMAHKNRIPYLFLEKGILRVDGHCLLLCQAESAIEIPGSMVSCLMIEPGVSVTHEAMKLCGENGTLLM
WVGEGGTRFYAAAHAHQDASRVLRQAAIHTNQRERIAAASRLYGLMFDDHMPPSFTIEKLRGLEGSRVKEIYVNLADKLG
MVWQGREEKSALNTSIGFATSCLYALCEVAILAAGYHPGIGVVHSGNPRSLVFDLADTVKFKTVVPLAFEIAATSPSNLN
MAVRHGCRDLFSRESMFETLLGHLENIFGTDHDCHD

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=261, Percent_Identity=40.2298850574713, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 30517; Mature: 30385

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDMPFRVPAPVRMAHKNRIPYLFLEKGILRVDGHCLLLCQAESAIEIPGSMVSCLMIE
CCCCCCCCCCCCHHHHHCCCCCEEEEECCEEEECCCEEEEEECCCCCCCCCHHEEEEEEC
PGVSVTHEAMKLCGENGTLLMWVGEGGTRFYAAAHAHQDASRVLRQAAIHTNQRERIAAA
CCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHH
SRLYGLMFDDHMPPSFTIEKLRGLEGSRVKEIYVNLADKLGMVWQGREEKSALNTSIGFA
HHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
TSCLYALCEVAILAAGYHPGIGVVHSGNPRSLVFDLADTVKFKTVVPLAFEIAATSPSNL
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEHHHHHHHEEECCEEEEEEECCCCCC
NMAVRHGCRDLFSRESMFETLLGHLENIFGTDHDCHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SFDMPFRVPAPVRMAHKNRIPYLFLEKGILRVDGHCLLLCQAESAIEIPGSMVSCLMIE
CCCCCCCCCCCHHHHHCCCCCEEEEECCEEEECCCEEEEEECCCCCCCCCHHEEEEEEC
PGVSVTHEAMKLCGENGTLLMWVGEGGTRFYAAAHAHQDASRVLRQAAIHTNQRERIAAA
CCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHH
SRLYGLMFDDHMPPSFTIEKLRGLEGSRVKEIYVNLADKLGMVWQGREEKSALNTSIGFA
HHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
TSCLYALCEVAILAAGYHPGIGVVHSGNPRSLVFDLADTVKFKTVVPLAFEIAATSPSNL
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEHHHHHHHEEECCEEEEEEECCCCCC
NMAVRHGCRDLFSRESMFETLLGHLENIFGTDHDCHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]