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The map label for this gene is 89885835

Identifier: 89885835

GI number: 89885835

Start: 112280

End: 112822

Strand: Reverse

Name: 89885835

Synonym: Rfer_4349

Alternate gene names: NA

Gene position: 112822-112280 (Counterclockwise)

Preceding gene: 89885836

Following gene: 89885834

Centisome position: 43.82

GC content: 55.99

Gene sequence:

>543_bases
ATGCCAGGCTTAGGTGAGCACCTGCCGCGTGAGCTGTTGATTGCACTGCCGGACATTGAAACCGACTTGTATCGGATTCA
CCAACTCGTCTGGCAGCACGTGGCACGGGCCGTTGAGTCTCAGGGCAGATTCGCACGCCCTGAATTCATTTACCGCATTG
ATGGCGGAATGATTCGGGTTCGGGGCAACCTGCCGAAAAACAAGACATCGGTTTCGGCCTTTCGTGCGAACGCGCCAGTG
CATCTTGATCTCGCGGCGGTATGGGGCTCTGAGCATGAAAACGCCGTACCAGAAGCTCACCTCGCGGACTGGTGCGCGGA
AAAGATTGAATCTGCCGGCTTTAAGGTGGCAAGTCTTGCTGTGACCAATTTTCAATATAGATGTGGTGTCAAACACGCCA
CAGACAACCGCCAGAACATCAGAATCCCCGTAGCCAGTGTCACCACGACTGTGACTGCCGGTGACACGCTAGCGTGTGCG
CTGACCTGGCGGCAAGGCATCGGGCGAGGTAAGCGTTTTGGTTTGGGTATGCTGGCCCATTGA

Upstream 100 bases:

>100_bases
AAAACCGCAATGCGCCGGACAAGCTGGAGGACACCATGTATCCGGGTATCGGCTCGACACATTCGCCCTACTGGACCAAT
AAAAGCTACTGCTGGATGCC

Downstream 100 bases:

>100_bases
TTCTTTTAGTGCATGCTTGTGATCGGATAATCATGCATAAGTTCTTTACCACTGCAAGTCAAAGTGTAGGGTCATCGATA
TGAGTTTCGATATGCCCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MPGLGEHLPRELLIALPDIETDLYRIHQLVWQHVARAVESQGRFARPEFIYRIDGGMIRVRGNLPKNKTSVSAFRANAPV
HLDLAAVWGSEHENAVPEAHLADWCAEKIESAGFKVASLAVTNFQYRCGVKHATDNRQNIRIPVASVTTTVTAGDTLACA
LTWRQGIGRGKRFGLGMLAH

Sequences:

>Translated_180_residues
MPGLGEHLPRELLIALPDIETDLYRIHQLVWQHVARAVESQGRFARPEFIYRIDGGMIRVRGNLPKNKTSVSAFRANAPV
HLDLAAVWGSEHENAVPEAHLADWCAEKIESAGFKVASLAVTNFQYRCGVKHATDNRQNIRIPVASVTTTVTAGDTLACA
LTWRQGIGRGKRFGLGMLAH
>Mature_179_residues
PGLGEHLPRELLIALPDIETDLYRIHQLVWQHVARAVESQGRFARPEFIYRIDGGMIRVRGNLPKNKTSVSAFRANAPVH
LDLAAVWGSEHENAVPEAHLADWCAEKIESAGFKVASLAVTNFQYRCGVKHATDNRQNIRIPVASVTTTVTAGDTLACAL
TWRQGIGRGKRFGLGMLAH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19859; Mature: 19728

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGLGEHLPRELLIALPDIETDLYRIHQLVWQHVARAVESQGRFARPEFIYRIDGGMIRV
CCCCHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEE
RGNLPKNKTSVSAFRANAPVHLDLAAVWGSEHENAVPEAHLADWCAEKIESAGFKVASLA
ECCCCCCCCCHHEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
VTNFQYRCGVKHATDNRQNIRIPVASVTTTVTAGDTLACALTWRQGIGRGKRFGLGMLAH
EECEEEECCCCCCCCCCCEEEEEEHHEEEEEECCCEEEEEEEHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PGLGEHLPRELLIALPDIETDLYRIHQLVWQHVARAVESQGRFARPEFIYRIDGGMIRV
CCCHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEE
RGNLPKNKTSVSAFRANAPVHLDLAAVWGSEHENAVPEAHLADWCAEKIESAGFKVASLA
ECCCCCCCCCHHEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
VTNFQYRCGVKHATDNRQNIRIPVASVTTTVTAGDTLACALTWRQGIGRGKRFGLGMLAH
EECEEEECCCCCCCCCCCEEEEEEHHEEEEEECCCEEEEEEEHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA