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The map label for this gene is rsmE [H]

Identifier: 89256081

GI number: 89256081

Start: 681054

End: 681782

Strand: Reverse

Name: rsmE [H]

Synonym: FTL_0692

Alternate gene names: 89256081

Gene position: 681782-681054 (Counterclockwise)

Preceding gene: 89256083

Following gene: 89256080

Centisome position: 35.96

GC content: 26.75

Gene sequence:

>729_bases
ATGAGAACTATTCGAGGTTTTTTCTCTGACATTTCAACAAAGACTACAATTTTTAATATTTCAGGAGAATATTATAACTA
TTTCAAAAATATGTTACGCTTAAAAAAATCTGATTTGATTGAACTATTCAATAATACTGATAGCTTACAATATAAGACTA
AAATTATCACGATTGATAATAAAAATATAACTCTTGAAGTAATCGATAAAAAACACATCAGTAATGAAAATAACTATATT
ACAAACCTCTATCAGGCTATTATTAAAAGTGAAAATTTTGAGCTTGTGATTCAAAAAGCTACCAAACTAGGGGTAAATAA
CATATATCCTATAATTACTGAATTTACAAATCACAAGTTTGATAAAAATGGCTTTGACAAAAAGCTAGAGCGCTGGCATA
AAATTGCTATTGCTGGCAGTGAACAATGTGGTCGTGTTTTTATTCCAAAAATTCATACTCCTATCGATATTAATGATTTA
CAAATGCCTCAAAATGACCTTAATTTAGTTTTATGTCCATATACTCAAGCAAAACAAGATTTTGTACAAAAGGTTAAATC
TAGTACAAATTTTAATATATTTATAGGACCAGAAGGTGGCTTTAGTGATAAAGAAATGAGCAAATTCCATAGCAATAATT
TTTATACAATTAATTTGGGCAAAAGAATACTTAAAGCAGAAACTGCTCCAATAAATATATTATCAATTATAAACTTTCTT
AAACAGTAA

Upstream 100 bases:

>100_bases
AGTTACAAAACTTTTATTAAAAATACCCATAAACTTTTCCTACTTTTAAAAAATTAAGAATTTATAATAAGAGATATGTA
TTTTACCAAATTTTAATTTT

Downstream 100 bases:

>100_bases
GTTTTACCAAGGGAATTGAACTAATTAATAAAGCTTGATAAAACAAATTAACTTAGCACAGTATTAGTCTAGCTTCCAAA
ATTGTACAACAAGAGGTTAA

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MRTIRGFFSDISTKTTIFNISGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYI
TNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDINDL
QMPQNDLNLVLCPYTQAKQDFVQKVKSSTNFNIFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSIINFL
KQ

Sequences:

>Translated_242_residues
MRTIRGFFSDISTKTTIFNISGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYI
TNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDINDL
QMPQNDLNLVLCPYTQAKQDFVQKVKSSTNFNIFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSIINFL
KQ
>Mature_242_residues
MRTIRGFFSDISTKTTIFNISGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYI
TNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDINDL
QMPQNDLNLVLCPYTQAKQDFVQKVKSSTNFNIFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSIINFL
KQ

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=239, Percent_Identity=27.1966527196653, Blast_Score=114, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 28078; Mature: 28078

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIRGFFSDISTKTTIFNISGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDN
CCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEC
KNITLEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKF
CEEEEEEECCHHCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHCCCCCHHHHHHHHCCCCC
DKNGFDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDINDLQMPQNDLNLVLCPYTQAKQD
CCCCHHHHHHHHHEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH
FVQKVKSSTNFNIFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSIINFL
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEECCCHHHHCCCCCHHHHHHHHHH
KQ
CC
>Mature Secondary Structure
MRTIRGFFSDISTKTTIFNISGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDN
CCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEC
KNITLEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKF
CEEEEEEECCHHCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHCCCCCHHHHHHHHCCCCC
DKNGFDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDINDLQMPQNDLNLVLCPYTQAKQD
CCCCHHHHHHHHHEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH
FVQKVKSSTNFNIFIGPEGGFSDKEMSKFHSNNFYTINLGKRILKAETAPINILSIINFL
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEECCCHHHHCCCCCHHHHHHHHHH
KQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]