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The map label for this gene is yhaJ [H]

Identifier: 89054512

GI number: 89054512

Start: 2024287

End: 2025186

Strand: Direct

Name: yhaJ [H]

Synonym: Jann_2021

Alternate gene names: 89054512

Gene position: 2024287-2025186 (Clockwise)

Preceding gene: 89054509

Following gene: 89054513

Centisome position: 46.88

GC content: 61.11

Gene sequence:

>900_bases
GTGATTGGCAAATTGACCCTCGATCAATTGCGCGTGCTCGTGGCTGTCGCCGATACCGGCAGCTTTACGGCCGCCAGCCA
GGCTGTCGGACGGGCGCAATCGGCGGTAAGTCAGATGATGGCCGCGCTGGAAAACGCGCAAGGTGTCCAGCTGTTTGATC
GGTCTTCCTACAGGCCCATGCTGACCGAGGCTGGACGTGTTCTGGTTGCCCAAGCGCGCACGACGCTGGCGGGGGCCTCC
CGTTTCGAGGCGATGGCAGAGCATATGCGCAGCGGCGTCGAGGCAGAACTGGCGCTGGCGATTGATCCGCTCGTGCCAAG
TGCACCTTTCATGCAAGGATTGCGTGACCTCAGCGCAAGATATCCTGATCTTTCGGTTTCATTCTCGACAGAAGGGCTTG
GTGGATCGCTCCGACGTTTGCGGGACGGTTCGGCATCGCTTGGGATTTGCACCTTGCTTCCCACCGTGCCGGATGATGTC
GTTGCCTACCCGCTGCTGCAAACCGCCATGACCCCGGTGGTTGCGGGCAATCATCCGCTTGCCTCACAGGACGGCCCGTT
GCAGCGCGGCGATCTGGAGCCGCATGTCCAGCTTGTTCTATCAGATCCCGTTGAACCGAGCGGGCCGAATTATGGCCTGA
CCAGCGCACGTCTCTGGCGGTTTGCCGATCTCAACCGCAGGCTGGATTTCCTGCTCGGGGGCTTTGGGTGGTGTCGGATG
CCAGAGCACCTTGTTGCAGACGCGCTGGCCGACGGGCGATTGGTCGCGCTGGATATCAAAAATGACAATGCGCCGCAGGA
TGGACTTCCGATTTATGCAGCGCATGCGAGGGATAGAGCACTCGGGCCAGCAGGGCGATGGTTTCTCGATGCGATGCGCG
AGTGCATGGCGGCCGCATAA

Upstream 100 bases:

>100_bases
AACCGAGAGATCGCGCGCGATTTGCGCCAACATCACGAAGTTCTCTCTTCCGAAAAACTGATAAAAAGGTGATAAAGATC
ATCATCTGGAGTGATGTTTT

Downstream 100 bases:

>100_bases
TTTCATTTGGTAACGGTCGTGCGTGGGTGGCGTGGCGATGTCGTTTGGCACGGTTGGCATCGCGAAGGGCGGGTTTGAGC
CCATTGTGCCAAATGCTGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MIGKLTLDQLRVLVAVADTGSFTAASQAVGRAQSAVSQMMAALENAQGVQLFDRSSYRPMLTEAGRVLVAQARTTLAGAS
RFEAMAEHMRSGVEAELALAIDPLVPSAPFMQGLRDLSARYPDLSVSFSTEGLGGSLRRLRDGSASLGICTLLPTVPDDV
VAYPLLQTAMTPVVAGNHPLASQDGPLQRGDLEPHVQLVLSDPVEPSGPNYGLTSARLWRFADLNRRLDFLLGGFGWCRM
PEHLVADALADGRLVALDIKNDNAPQDGLPIYAAHARDRALGPAGRWFLDAMRECMAAA

Sequences:

>Translated_299_residues
MIGKLTLDQLRVLVAVADTGSFTAASQAVGRAQSAVSQMMAALENAQGVQLFDRSSYRPMLTEAGRVLVAQARTTLAGAS
RFEAMAEHMRSGVEAELALAIDPLVPSAPFMQGLRDLSARYPDLSVSFSTEGLGGSLRRLRDGSASLGICTLLPTVPDDV
VAYPLLQTAMTPVVAGNHPLASQDGPLQRGDLEPHVQLVLSDPVEPSGPNYGLTSARLWRFADLNRRLDFLLGGFGWCRM
PEHLVADALADGRLVALDIKNDNAPQDGLPIYAAHARDRALGPAGRWFLDAMRECMAAA
>Mature_299_residues
MIGKLTLDQLRVLVAVADTGSFTAASQAVGRAQSAVSQMMAALENAQGVQLFDRSSYRPMLTEAGRVLVAQARTTLAGAS
RFEAMAEHMRSGVEAELALAIDPLVPSAPFMQGLRDLSARYPDLSVSFSTEGLGGSLRRLRDGSASLGICTLLPTVPDDV
VAYPLLQTAMTPVVAGNHPLASQDGPLQRGDLEPHVQLVLSDPVEPSGPNYGLTSARLWRFADLNRRLDFLLGGFGWCRM
PEHLVADALADGRLVALDIKNDNAPQDGLPIYAAHARDRALGPAGRWFLDAMRECMAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=288, Percent_Identity=29.5138888888889, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI87082024, Length=252, Percent_Identity=26.1904761904762, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787949, Length=255, Percent_Identity=27.843137254902, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786713, Length=260, Percent_Identity=27.3076923076923, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786401, Length=314, Percent_Identity=24.8407643312102, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786508, Length=263, Percent_Identity=23.9543726235741, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI157672245, Length=183, Percent_Identity=32.7868852459016, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788626, Length=209, Percent_Identity=33.0143540669856, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=145, Percent_Identity=28.2758620689655, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31918; Mature: 31918

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGKLTLDQLRVLVAVADTGSFTAASQAVGRAQSAVSQMMAALENAQGVQLFDRSSYRPM
CCCCCCHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHH
LTEAGRVLVAQARTTLAGASRFEAMAEHMRSGVEAELALAIDPLVPSAPFMQGLRDLSAR
HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHC
YPDLSVSFSTEGLGGSLRRLRDGSASLGICTLLPTVPDDVVAYPLLQTAMTPVVAGNHPL
CCCCEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEECCCCC
ASQDGPLQRGDLEPHVQLVLSDPVEPSGPNYGLTSARLWRFADLNRRLDFLLGGFGWCRM
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCC
PEHLVADALADGRLVALDIKNDNAPQDGLPIYAAHARDRALGPAGRWFLDAMRECMAAA
CHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIGKLTLDQLRVLVAVADTGSFTAASQAVGRAQSAVSQMMAALENAQGVQLFDRSSYRPM
CCCCCCHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHH
LTEAGRVLVAQARTTLAGASRFEAMAEHMRSGVEAELALAIDPLVPSAPFMQGLRDLSAR
HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHC
YPDLSVSFSTEGLGGSLRRLRDGSASLGICTLLPTVPDDVVAYPLLQTAMTPVVAGNHPL
CCCCEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEECCCCC
ASQDGPLQRGDLEPHVQLVLSDPVEPSGPNYGLTSARLWRFADLNRRLDFLLGGFGWCRM
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCC
PEHLVADALADGRLVALDIKNDNAPQDGLPIYAAHARDRALGPAGRWFLDAMRECMAAA
CHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]