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The map label for this gene is ihfA

Identifier: 89054274

GI number: 89054274

Start: 1771684

End: 1771986

Strand: Reverse

Name: ihfA

Synonym: Jann_1783

Alternate gene names: 89054274

Gene position: 1771986-1771684 (Counterclockwise)

Preceding gene: 89054275

Following gene: 89054273

Centisome position: 41.04

GC content: 60.73

Gene sequence:

>303_bases
ATGTCGGGTAAGACTTTGACGCGCATGGACCTAAGCGAAGCGGTGTTCCGCGAAGTGGGCTTGTCCCGCAACGAAAGCTC
TGAGTTGGTGGAGCGCGTTTTGCAGTTGATGTCGGACGCGTTGGTCGATGGAGAACAGGTGAAAGTCTCGTCCTTCGGCA
CGTTCTCGGTCCGCTCCAAAACGGCCCGTGTGGGTCGCAACCCGAAGACCGGGGAAGAGGTGCCGATCAGCCCGCGCCGC
GTGCTGACATTCCGGCCCTCGCATCTGATGAAAGATCGCGTCGCAGCGGGCAACCGCAGCTAA

Upstream 100 bases:

>100_bases
AAGCGTTAACGCGCCACAGAAACGACGCCGCGCAACACACTGTATTGACTAAAGAAACCGCATAATTCATCCTGTCCTCC
AAATCAGGGGGACTGGATAT

Downstream 100 bases:

>100_bases
GGGTCGGCGCGGGACGCACGGCAAACGAAGGTCCGCATCACTCCGGCAGAGGGTGAATGGACAGAGGCAACGACCCGAAG
CCTCCCGCAAAAAGCGGGGC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MSGKTLTRMDLSEAVFREVGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSKTARVGRNPKTGEEVPISPRR
VLTFRPSHLMKDRVAAGNRS

Sequences:

>Translated_100_residues
MSGKTLTRMDLSEAVFREVGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSKTARVGRNPKTGEEVPISPRR
VLTFRPSHLMKDRVAAGNRS
>Mature_99_residues
SGKTLTRMDLSEAVFREVGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSKTARVGRNPKTGEEVPISPRRV
LTFRPSHLMKDRVAAGNRS

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=90, Percent_Identity=51.1111111111111, Blast_Score=99, Evalue=5e-23,
Organism=Escherichia coli, GI1786644, Length=74, Percent_Identity=33.7837837837838, Blast_Score=62, Evalue=8e-12,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=30.3370786516854, Blast_Score=59, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_JANSC (Q28RG2)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_509725.1
- ProteinModelPortal:   Q28RG2
- SMR:   Q28RG2
- STRING:   Q28RG2
- GeneID:   3934232
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_1783
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   RDKSARV
- PhylomeDB:   Q28RG2
- ProtClustDB:   PRK00285
- BioCyc:   JSP290400:JANN_1783-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11079; Mature: 10948

Theoretical pI: Translated: 11.16; Mature: 11.16

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKTLTRMDLSEAVFREVGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSK
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
TARVGRNPKTGEEVPISPRRVLTFRPSHLMKDRVAAGNRS
HHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGKTLTRMDLSEAVFREVGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSK
CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
TARVGRNPKTGEEVPISPRRVLTFRPSHLMKDRVAAGNRS
HHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA