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The map label for this gene is rbsC [H]

Identifier: 89053865

GI number: 89053865

Start: 1343026

End: 1344078

Strand: Direct

Name: rbsC [H]

Synonym: Jann_1374

Alternate gene names: 89053865

Gene position: 1343026-1344078 (Clockwise)

Preceding gene: 89053864

Following gene: 89053866

Centisome position: 31.1

GC content: 62.11

Gene sequence:

>1053_bases
ATGTCCGATAGTTATGAGGCGGCCACGAACAAAAGCGAAAGCGTCGCGGAATTCGACCACGGCAAACGGACTTTTGTGGG
CCAGGTGCAGCACACCCTCCATGTCTCCCCGTCGCTGGTGCCGCTGATGGTGCTGATCTCAGCCGTGATCGTGTTCGCAC
TGCTATTGGGGGATCGGTTCCTGTCTCCCTTCGCCCTGACACTGATCCTGCAACAGGTGCAGATCGTGGGGATCGTCGCC
CTGGCGCAATCGCTGGTGATCCTGACCGCGGGGATTGACCTGTCGGTGGGCGCGGTGATGGTCATCTCGTCCGTTGTCAT
GGGGCAATTCACGTTCCGCTACGGGTTGCCGCCGGAAATCGCCATCTTGTGCGGTCTTGCCTGCGGGGCGCTGTGCGGGT
TCATCTCGGGCTGTCTGGTGGCCATCGTCAAGCTCCCGCCCTTCATCGTGACGTTGGGCATGTGGCAAATCGTGCTGGCC
GCGAACTTTCTCTACTCCCGCAATGAGACCATCCGGTCCCAGGATATCGAGGCCGAGGCCGGGATCCTGCAATTCTTCGG
CGAACGGTTGGAGATTGGCGGCGCGATCTTCACCTATGGCGTGATCTTCATGCTGGTCCTGGCGGTCGTCCTGGCCTATG
CGCTGCGCTTCACCGCCTGGGGGCGCCACGTCTATGCCGTGGGCGATGACCCGGAAGCGGCAGAACTTTCGGGTGTGAAC
GTCAAGCGGACGTTGATTTCCGTCTACATGCTGGCGGGCCTCATCTGCGCCTTTGCCGGGTGGGCCTTGATCGGCCGCAT
CGGATCCGTGTCGCCCACATCTGGGCAATTGGCCAATATCGAGTCGATCACCGCTGTGGTGATCGGGGGGATCTCCCTCT
TTGGGGGGCGCGGCTCGATCATGGGGGCGCTTTTTGGCGCGTTGATCGTGGGGGTCTTCACCCTTGGCCTGCGCCTTGCG
GGGGCCGATCCGCAATGGACAAACCTTCTCATCGGCCTGCTGATCATCGCAGCGGTCGGTGTCGACCAATGGATCCGGAG
GGCCGCGGCATGA

Upstream 100 bases:

>100_bases
CTTGACCTCTGCTGGGGCTAAGCGTCACCTGATCTAGACTGACAGACCCGTCCGAAGCCATGGGCCTTGGGCGGGTCAAT
TTTTTGATAAAGGGGGGATC

Downstream 100 bases:

>100_bases
GTGAACCAATTCTAAGTGCCCGCAACATCGTCAAACGATACGGTCGCGTGACGGCCATCGACCATTGTGATTTTGACCTG
TTCCCGGGTGAAATCCTCGC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSDSYEAATNKSESVAEFDHGKRTFVGQVQHTLHVSPSLVPLMVLISAVIVFALLLGDRFLSPFALTLILQQVQIVGIVA
LAQSLVILTAGIDLSVGAVMVISSVVMGQFTFRYGLPPEIAILCGLACGALCGFISGCLVAIVKLPPFIVTLGMWQIVLA
ANFLYSRNETIRSQDIEAEAGILQFFGERLEIGGAIFTYGVIFMLVLAVVLAYALRFTAWGRHVYAVGDDPEAAELSGVN
VKRTLISVYMLAGLICAFAGWALIGRIGSVSPTSGQLANIESITAVVIGGISLFGGRGSIMGALFGALIVGVFTLGLRLA
GADPQWTNLLIGLLIIAAVGVDQWIRRAAA

Sequences:

>Translated_350_residues
MSDSYEAATNKSESVAEFDHGKRTFVGQVQHTLHVSPSLVPLMVLISAVIVFALLLGDRFLSPFALTLILQQVQIVGIVA
LAQSLVILTAGIDLSVGAVMVISSVVMGQFTFRYGLPPEIAILCGLACGALCGFISGCLVAIVKLPPFIVTLGMWQIVLA
ANFLYSRNETIRSQDIEAEAGILQFFGERLEIGGAIFTYGVIFMLVLAVVLAYALRFTAWGRHVYAVGDDPEAAELSGVN
VKRTLISVYMLAGLICAFAGWALIGRIGSVSPTSGQLANIESITAVVIGGISLFGGRGSIMGALFGALIVGVFTLGLRLA
GADPQWTNLLIGLLIIAAVGVDQWIRRAAA
>Mature_349_residues
SDSYEAATNKSESVAEFDHGKRTFVGQVQHTLHVSPSLVPLMVLISAVIVFALLLGDRFLSPFALTLILQQVQIVGIVAL
AQSLVILTAGIDLSVGAVMVISSVVMGQFTFRYGLPPEIAILCGLACGALCGFISGCLVAIVKLPPFIVTLGMWQIVLAA
NFLYSRNETIRSQDIEAEAGILQFFGERLEIGGAIFTYGVIFMLVLAVVLAYALRFTAWGRHVYAVGDDPEAAELSGVNV
KRTLISVYMLAGLICAFAGWALIGRIGSVSPTSGQLANIESITAVVIGGISLFGGRGSIMGALFGALIVGVFTLGLRLAG
ADPQWTNLLIGLLIIAAVGVDQWIRRAAA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=325, Percent_Identity=33.8461538461538, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=31.1036789297659, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1788896, Length=271, Percent_Identity=33.9483394833948, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87082395, Length=322, Percent_Identity=28.2608695652174, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1789992, Length=130, Percent_Identity=41.5384615384615, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788471, Length=285, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI145693214, Length=279, Percent_Identity=35.4838709677419, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1787794, Length=284, Percent_Identity=32.7464788732394, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI145693152, Length=214, Percent_Identity=30.8411214953271, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787793, Length=301, Percent_Identity=30.2325581395349, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36930; Mature: 36799

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSYEAATNKSESVAEFDHGKRTFVGQVQHTLHVSPSLVPLMVLISAVIVFALLLGDRF
CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LSPFALTLILQQVQIVGIVALAQSLVILTAGIDLSVGAVMVISSVVMGQFTFRYGLPPEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
AILCGLACGALCGFISGCLVAIVKLPPFIVTLGMWQIVLAANFLYSRNETIRSQDIEAEA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHH
GILQFFGERLEIGGAIFTYGVIFMLVLAVVLAYALRFTAWGRHVYAVGDDPEAAELSGVN
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCH
VKRTLISVYMLAGLICAFAGWALIGRIGSVSPTSGQLANIESITAVVIGGISLFGGRGSI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
MGALFGALIVGVFTLGLRLAGADPQWTNLLIGLLIIAAVGVDQWIRRAAA
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCC
>Mature Secondary Structure 
SDSYEAATNKSESVAEFDHGKRTFVGQVQHTLHVSPSLVPLMVLISAVIVFALLLGDRF
CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LSPFALTLILQQVQIVGIVALAQSLVILTAGIDLSVGAVMVISSVVMGQFTFRYGLPPEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
AILCGLACGALCGFISGCLVAIVKLPPFIVTLGMWQIVLAANFLYSRNETIRSQDIEAEA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHH
GILQFFGERLEIGGAIFTYGVIFMLVLAVVLAYALRFTAWGRHVYAVGDDPEAAELSGVN
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCH
VKRTLISVYMLAGLICAFAGWALIGRIGSVSPTSGQLANIESITAVVIGGISLFGGRGSI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
MGALFGALIVGVFTLGLRLAGADPQWTNLLIGLLIIAAVGVDQWIRRAAA
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]