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The map label for this gene is rbsB [H]

Identifier: 89053864

GI number: 89053864

Start: 1341918

End: 1342946

Strand: Direct

Name: rbsB [H]

Synonym: Jann_1373

Alternate gene names: 89053864

Gene position: 1341918-1342946 (Clockwise)

Preceding gene: 89053862

Following gene: 89053865

Centisome position: 31.08

GC content: 63.85

Gene sequence:

>1029_bases
ATGCGCAAATCAACCAAGACGGCCTTGATGGGCGGCGCAATTGCATTGGCAAGTTCTGGCGCGGCATTCGCCGATGCCCA
TGGCACGTCCGCATGCCTGATCACCAAAACCGACACCAACCCGTTTTTCGTGATGATGCGCGAAGGTGCGACGGCAGCGG
CGGAAGAGCTTGGCATCACGCTCAACGCCTATGCCGGTGAGGTCGACGGTGACCATGAAACGCAAGTGGCCGCGATTGAG
ACCTGCATTGCCAACGGCGCGTCGGGCATCCTGATCACCGCCTCTGACACGTCCTCCATCGTGTCTGCGGTTGAGCAGGC
GCGCGAAGCTGGCCTTCTGGTCATCGCGCTCGATACGCCGCTTGATCCGATTGACGCAGCCGACGCGACCTTCGCGACGG
ACAATTTTGAAGCGGGCCGCCTGATCGGGGCCTGGGCCGCCGCCTCCCTGGGTGACGCCGCCGCTGATGCCCGTATCGCG
ATGCTGGACCTGGCCGTCAGCCAGCCCACCGTGGGCGTGCTGCGGGATCAGGGTTTCCTGGAAGGGTTTGGCATCGACAT
CGGCGACCCAAGCCGTTGGGGGGATGAGGACGACCCCCGTATCGTCGGCAACGCCGTCACTGCGGGTAACGAAGAAGGCG
GTCGCCGCGCCATGGAGGAGCTTCTGGCCCTCGATCCGATGATCAACGTGGTCTACACGATCAATGAGCCTGCCGCGGCC
GGCGCGTATGAGGCTCTGCGGGCCATCGGTCGTGAAAACGACGTGATGATCGTCTCGGTGGATGGCGGTTGCCCCGGCGT
GCAGAACATCGCCGACGGCGTCATTGGCGCGACGTCGCAGCAATATCCGCTGTTGATGGCGTCCCTCGGGATTGAGGCGA
TCGCCCAGTTCGCCGCTGACGGCACCGTGCCGCAACCCACGGACGGGCTTGATTTCTTCAATACCGGTGTGGCGCTGGTC
ACCGATCAGCCCGCTGACGGTGTGGACTCCATCTCGGTGGCGGAAGGTCTTGACCTCTGCTGGGGCTAA

Upstream 100 bases:

>100_bases
ATAATAAATAACTCTCTGGAAGTTAGTTATTGACTCTCTTTCCACGGTCGGTCAGATATCGCTTTGATTTTATCGTGATT
AACCTTGAGGGAGGATACTT

Downstream 100 bases:

>100_bases
GCGTCACCTGATCTAGACTGACAGACCCGTCCGAAGCCATGGGCCTTGGGCGGGTCAATTTTTTGATAAAGGGGGGATCA
TGTCCGATAGTTATGAGGCG

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRKSTKTALMGGAIALASSGAAFADAHGTSACLITKTDTNPFFVMMREGATAAAEELGITLNAYAGEVDGDHETQVAAIE
TCIANGASGILITASDTSSIVSAVEQAREAGLLVIALDTPLDPIDAADATFATDNFEAGRLIGAWAAASLGDAAADARIA
MLDLAVSQPTVGVLRDQGFLEGFGIDIGDPSRWGDEDDPRIVGNAVTAGNEEGGRRAMEELLALDPMINVVYTINEPAAA
GAYEALRAIGRENDVMIVSVDGGCPGVQNIADGVIGATSQQYPLLMASLGIEAIAQFAADGTVPQPTDGLDFFNTGVALV
TDQPADGVDSISVAEGLDLCWG

Sequences:

>Translated_342_residues
MRKSTKTALMGGAIALASSGAAFADAHGTSACLITKTDTNPFFVMMREGATAAAEELGITLNAYAGEVDGDHETQVAAIE
TCIANGASGILITASDTSSIVSAVEQAREAGLLVIALDTPLDPIDAADATFATDNFEAGRLIGAWAAASLGDAAADARIA
MLDLAVSQPTVGVLRDQGFLEGFGIDIGDPSRWGDEDDPRIVGNAVTAGNEEGGRRAMEELLALDPMINVVYTINEPAAA
GAYEALRAIGRENDVMIVSVDGGCPGVQNIADGVIGATSQQYPLLMASLGIEAIAQFAADGTVPQPTDGLDFFNTGVALV
TDQPADGVDSISVAEGLDLCWG
>Mature_342_residues
MRKSTKTALMGGAIALASSGAAFADAHGTSACLITKTDTNPFFVMMREGATAAAEELGITLNAYAGEVDGDHETQVAAIE
TCIANGASGILITASDTSSIVSAVEQAREAGLLVIALDTPLDPIDAADATFATDNFEAGRLIGAWAAASLGDAAADARIA
MLDLAVSQPTVGVLRDQGFLEGFGIDIGDPSRWGDEDDPRIVGNAVTAGNEEGGRRAMEELLALDPMINVVYTINEPAAA
GAYEALRAIGRENDVMIVSVDGGCPGVQNIADGVIGATSQQYPLLMASLGIEAIAQFAADGTVPQPTDGLDFFNTGVALV
TDQPADGVDSISVAEGLDLCWG

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=292, Percent_Identity=27.7397260273973, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790526, Length=315, Percent_Identity=23.8095238095238, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 34880; Mature: 34880

Theoretical pI: Translated: 3.71; Mature: 3.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSTKTALMGGAIALASSGAAFADAHGTSACLITKTDTNPFFVMMREGATAAAEELGIT
CCCCHHHHHHCCEEEEECCCCEEECCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHCEE
LNAYAGEVDGDHETQVAAIETCIANGASGILITASDTSSIVSAVEQAREAGLLVIALDTP
EEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCC
LDPIDAADATFATDNFEAGRLIGAWAAASLGDAAADARIAMLDLAVSQPTVGVLRDQGFL
CCCCCCCCCEEECCCCCCCCEEEHHHHHHCCCHHCCCEEEEEEEECCCCCCEEEECCCCE
EGFGIDIGDPSRWGDEDDPRIVGNAVTAGNEEGGRRAMEELLALDPMINVVYTINEPAAA
EECCCCCCCCCCCCCCCCCEEEECEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC
GAYEALRAIGRENDVMIVSVDGGCPGVQNIADGVIGATSQQYPLLMASLGIEAIAQFAAD
HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHCC
GTVPQPTDGLDFFNTGVALVTDQPADGVDSISVAEGLDLCWG
CCCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHCCHHCCC
>Mature Secondary Structure
MRKSTKTALMGGAIALASSGAAFADAHGTSACLITKTDTNPFFVMMREGATAAAEELGIT
CCCCHHHHHHCCEEEEECCCCEEECCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHCEE
LNAYAGEVDGDHETQVAAIETCIANGASGILITASDTSSIVSAVEQAREAGLLVIALDTP
EEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCC
LDPIDAADATFATDNFEAGRLIGAWAAASLGDAAADARIAMLDLAVSQPTVGVLRDQGFL
CCCCCCCCCEEECCCCCCCCEEEHHHHHHCCCHHCCCEEEEEEEECCCCCCEEEECCCCE
EGFGIDIGDPSRWGDEDDPRIVGNAVTAGNEEGGRRAMEELLALDPMINVVYTINEPAAA
EECCCCCCCCCCCCCCCCCEEEECEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC
GAYEALRAIGRENDVMIVSVDGGCPGVQNIADGVIGATSQQYPLLMASLGIEAIAQFAAD
HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHCC
GTVPQPTDGLDFFNTGVALVTDQPADGVDSISVAEGLDLCWG
CCCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]