| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is rbsA3 [H]
Identifier: 89053866
GI number: 89053866
Start: 1344075
End: 1344848
Strand: Direct
Name: rbsA3 [H]
Synonym: Jann_1375
Alternate gene names: 89053866
Gene position: 1344075-1344848 (Clockwise)
Preceding gene: 89053865
Following gene: 89053871
Centisome position: 31.13
GC content: 59.82
Gene sequence:
>774_bases ATGAGTGAACCAATTCTAAGTGCCCGCAACATCGTCAAACGATACGGTCGCGTGACGGCCATCGACCATTGTGATTTTGA CCTGTTCCCGGGTGAAATCCTCGCGGTGATTGGCGACAACGGGGCCGGCAAATCCAGCCTAATCAAGGCGGTATCGGGGG CGACGATCCCGGATGAAGGGGAAGTGTGGCTGGAGGGGCAGAAAGTCTCCTTCCACTCGCCCAACGATGCCCGCGCGGCG GGGATCGAGACGGTCTACCAGCAACTCGCCATGAGCCCGGCACTGTCCATCGCCGACAACATGTTCATGGGGCGCGAATT GCGCAAGCCGGGATTTGCAGGCAAATACCTGCGGATGCTGGACAAGAAGAAGATGGAAGACTTCGCGCGGGAGAAACTGA CCGAGCTTGGGTTGATGACGATCCAGAACATCAATCAGGCGGTTGAGACGCTGTCCGGCGGCCAGCGGCAAGGCGTCGCC GTGGCGCGGGCGGCGGCATTCGGATCCAAGGTCATCATCCTCGATGAACCGACCGCGGCCCTGGGCGTCAAGGAAAGCCG TAAGGTGCTGGAGCTGATCCAAGACGTGAAATCGCGCGGCATCCCGATCATTCTGATCAGCCACAACATGCCCCATGTTT TCGAAGTGGCAGACCGCATCCATATTCACCGTCTTGGCAAGCGGCTGTGCGTCGTGGACCCCAACGATATCTCGATGTCC GACGCGGTGGCCCTGATGACCGGCGCGATGACCCCGGATGAAATCGCGGCCTAA
Upstream 100 bases:
>100_bases TGCGCCTTGCGGGGGCCGATCCGCAATGGACAAACCTTCTCATCGGCCTGCTGATCATCGCAGCGGTCGGTGTCGACCAA TGGATCCGGAGGGCCGCGGC
Downstream 100 bases:
>100_bases GCGGGCAGGACGCGGGTGGCCGTCTGGCGCAACGTCGCAATGAACCTGGCGTTGCGGGCGTGCCCGCCGTCTTCGTCCAT TCGGGTGATGTTCCATCCCA
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MSEPILSARNIVKRYGRVTAIDHCDFDLFPGEILAVIGDNGAGKSSLIKAVSGATIPDEGEVWLEGQKVSFHSPNDARAA GIETVYQQLAMSPALSIADNMFMGRELRKPGFAGKYLRMLDKKKMEDFAREKLTELGLMTIQNINQAVETLSGGQRQGVA VARAAAFGSKVIILDEPTAALGVKESRKVLELIQDVKSRGIPIILISHNMPHVFEVADRIHIHRLGKRLCVVDPNDISMS DAVALMTGAMTPDEIAA
Sequences:
>Translated_257_residues MSEPILSARNIVKRYGRVTAIDHCDFDLFPGEILAVIGDNGAGKSSLIKAVSGATIPDEGEVWLEGQKVSFHSPNDARAA GIETVYQQLAMSPALSIADNMFMGRELRKPGFAGKYLRMLDKKKMEDFAREKLTELGLMTIQNINQAVETLSGGQRQGVA VARAAAFGSKVIILDEPTAALGVKESRKVLELIQDVKSRGIPIILISHNMPHVFEVADRIHIHRLGKRLCVVDPNDISMS DAVALMTGAMTPDEIAA >Mature_256_residues SEPILSARNIVKRYGRVTAIDHCDFDLFPGEILAVIGDNGAGKSSLIKAVSGATIPDEGEVWLEGQKVSFHSPNDARAAG IETVYQQLAMSPALSIADNMFMGRELRKPGFAGKYLRMLDKKKMEDFAREKLTELGLMTIQNINQAVETLSGGQRQGVAV ARAAAFGSKVIILDEPTAALGVKESRKVLELIQDVKSRGIPIILISHNMPHVFEVADRIHIHRLGKRLCVVDPNDISMSD AVALMTGAMTPDEIAA
Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]
COG id: COG1129
COG function: function code G; ABC-type sugar transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=233, Percent_Identity=30.9012875536481, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI153792144, Length=227, Percent_Identity=28.6343612334802, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI116734710, Length=212, Percent_Identity=26.8867924528302, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI27881501, Length=224, Percent_Identity=24.1071428571429, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI30795238, Length=224, Percent_Identity=24.1071428571429, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI105990541, Length=241, Percent_Identity=27.3858921161826, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI150417984, Length=233, Percent_Identity=27.4678111587983, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI45446740, Length=223, Percent_Identity=27.3542600896861, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI47078218, Length=223, Percent_Identity=27.3542600896861, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27436953, Length=226, Percent_Identity=25.6637168141593, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27477115, Length=200, Percent_Identity=28, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI46592956, Length=204, Percent_Identity=28.4313725490196, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI46592978, Length=204, Percent_Identity=28.4313725490196, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI46592898, Length=204, Percent_Identity=28.4313725490196, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI46592915, Length=204, Percent_Identity=28.4313725490196, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI46592964, Length=204, Percent_Identity=28.4313725490196, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI46592971, Length=204, Percent_Identity=28.4313725490196, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI11967971, Length=208, Percent_Identity=24.5192307692308, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI31657092, Length=234, Percent_Identity=20.5128205128205, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI48995001, Length=246, Percent_Identity=36.1788617886179, Blast_Score=166, Evalue=1e-42, Organism=Escherichia coli, GI1790190, Length=252, Percent_Identity=32.5396825396825, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1788472, Length=246, Percent_Identity=32.1138211382114, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1788210, Length=226, Percent_Identity=33.1858407079646, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1790525, Length=250, Percent_Identity=31.6, Blast_Score=131, Evalue=6e-32, Organism=Escherichia coli, GI1787792, Length=254, Percent_Identity=32.2834645669291, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1789991, Length=257, Percent_Identity=32.295719844358, Blast_Score=128, Evalue=4e-31, Organism=Escherichia coli, GI1788897, Length=241, Percent_Identity=33.6099585062241, Blast_Score=128, Evalue=5e-31, Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=31.0924369747899, Blast_Score=110, Evalue=9e-26, Organism=Escherichia coli, GI1789864, Length=243, Percent_Identity=26.3374485596708, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI87081709, Length=244, Percent_Identity=27.8688524590164, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=30.5936073059361, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1789962, Length=244, Percent_Identity=30.327868852459, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787712, Length=240, Percent_Identity=28.75, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI145693107, Length=241, Percent_Identity=31.1203319502075, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1786398, Length=221, Percent_Identity=30.316742081448, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790544, Length=226, Percent_Identity=28.3185840707965, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1787500, Length=210, Percent_Identity=28.5714285714286, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786803, Length=253, Percent_Identity=26.0869565217391, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1790162, Length=240, Percent_Identity=27.5, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI48994997, Length=230, Percent_Identity=25.6521739130435, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=25.8771929824561, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789672, Length=217, Percent_Identity=25.3456221198157, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786872, Length=228, Percent_Identity=29.3859649122807, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI87082267, Length=219, Percent_Identity=28.310502283105, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786345, Length=248, Percent_Identity=27.4193548387097, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI48994943, Length=240, Percent_Identity=27.5, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787758, Length=236, Percent_Identity=25.8474576271186, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788225, Length=221, Percent_Identity=27.6018099547511, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=27.4261603375527, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1790534, Length=215, Percent_Identity=28.3720930232558, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787089, Length=234, Percent_Identity=29.0598290598291, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87081834, Length=220, Percent_Identity=27.7272727272727, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790467, Length=241, Percent_Identity=26.5560165975104, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87081782, Length=242, Percent_Identity=27.6859504132231, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=29.8642533936652, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789593, Length=240, Percent_Identity=27.5, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=28, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=27.8846153846154, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48994883, Length=227, Percent_Identity=26.431718061674, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786698, Length=216, Percent_Identity=26.3888888888889, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1790739, Length=219, Percent_Identity=24.2009132420091, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788165, Length=217, Percent_Identity=27.6497695852535, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082268, Length=222, Percent_Identity=22.972972972973, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787547, Length=240, Percent_Identity=25.8333333333333, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=27.7486910994764, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=27.1844660194175, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787164, Length=221, Percent_Identity=28.5067873303167, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=27.4881516587678, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788506, Length=229, Percent_Identity=24.0174672489083, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787143, Length=227, Percent_Identity=25.5506607929515, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788450, Length=214, Percent_Identity=26.1682242990654, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786703, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787759, Length=246, Percent_Identity=23.5772357723577, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI2367384, Length=196, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786981, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1788644, Length=222, Percent_Identity=25.2252252252252, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87082064, Length=211, Percent_Identity=27.4881516587678, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115533608, Length=227, Percent_Identity=25.9911894273128, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17510237, Length=227, Percent_Identity=24.6696035242291, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17565586, Length=227, Percent_Identity=23.7885462555066, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193209708, Length=215, Percent_Identity=29.7674418604651, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17541710, Length=212, Percent_Identity=30.188679245283, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983510, Length=226, Percent_Identity=26.1061946902655, Blast_Score=64, Evalue=1e-10, Organism=Caenorhabditis elegans, GI71983516, Length=226, Percent_Identity=26.1061946902655, Blast_Score=64, Evalue=1e-10, Organism=Drosophila melanogaster, GI24666092, Length=223, Percent_Identity=27.8026905829596, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI28574533, Length=208, Percent_Identity=30.2884615384615, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI221512771, Length=221, Percent_Identity=26.6968325791855, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24643674, Length=236, Percent_Identity=22.4576271186441, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI28571209, Length=228, Percent_Identity=26.7543859649123, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI28574150, Length=232, Percent_Identity=25.4310344827586, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI116007328, Length=232, Percent_Identity=25.4310344827586, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI116007184, Length=225, Percent_Identity=24.8888888888889, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI221500365, Length=225, Percent_Identity=24.8888888888889, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24659289, Length=216, Percent_Identity=27.3148148148148, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI28573571, Length=225, Percent_Identity=23.1111111111111, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28573573, Length=225, Percent_Identity=23.1111111111111, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136592, Length=217, Percent_Identity=26.2672811059908, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648314, Length=225, Percent_Identity=24.8888888888889, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28574744, Length=202, Percent_Identity=26.2376237623762, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 27877; Mature: 27745
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPILSARNIVKRYGRVTAIDHCDFDLFPGEILAVIGDNGAGKSSLIKAVSGATIPDEG CCCCHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC EVWLEGQKVSFHSPNDARAAGIETVYQQLAMSPALSIADNMFMGRELRKPGFAGKYLRML CEEEECCEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHH DKKKMEDFAREKLTELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIILDEPTAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCCHH LGVKESRKVLELIQDVKSRGIPIILISHNMPHVFEVADRIHIHRLGKRLCVVDPNDISMS HCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHH DAVALMTGAMTPDEIAA HHHHHHHCCCCHHHHCC >Mature Secondary Structure SEPILSARNIVKRYGRVTAIDHCDFDLFPGEILAVIGDNGAGKSSLIKAVSGATIPDEG CCCHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC EVWLEGQKVSFHSPNDARAAGIETVYQQLAMSPALSIADNMFMGRELRKPGFAGKYLRML CEEEECCEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHH DKKKMEDFAREKLTELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIILDEPTAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCCHH LGVKESRKVLELIQDVKSRGIPIILISHNMPHVFEVADRIHIHRLGKRLCVVDPNDISMS HCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHH DAVALMTGAMTPDEIAA HHHHHHHCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA