Click here to switch to the map view.

The map label for this gene is bphR [H]

Identifier: 89053367

GI number: 89053367

Start: 832472

End: 833134

Strand: Direct

Name: bphR [H]

Synonym: Jann_0876

Alternate gene names: 89053367

Gene position: 832472-833134 (Clockwise)

Preceding gene: 89053366

Following gene: 89053371

Centisome position: 19.28

GC content: 57.16

Gene sequence:

>663_bases
ATGGCTCAGGCAGCAGAAAAACTCACGGCGGCGTCGGCGATCTATGCAGCGATCAAGAGCGACCTGCTGCGCGGTATCTT
TCCAGCCGGCTCTCGCCTGTCCATCAAGGATCTGGCAGATCGGTACGAAACGTCCGTCAATCCGGTTCGGGAGGCTCTTT
CCCGGTTGTCGGCAGAGCGCATCGTTGATCAGCGCGAACAGCGGGGGTTCGCGGTGCCCGTTATCACCGATGATGATCTG
CGAGAGTTGGTCAAAACGCGGTGCTGGATGGAGGATATCGCGCTGCGCGAAAGCATCGCGAACACGGATGAGACCTATAC
GCTGAACATTATCACCGCATACCACCGCCTTGCGCACACGCAATTTCTGGGGTCCGACGGGTTGCCAAACACGGATTGGG
AAGATCGCCACCGCATGTTTCACCTTGCATTGATCGCGAATTGCGGGTCGTCGTGGTTATTGTCGTTTTGCGATCATCTG
ATGTTTCAAGCAACCCGGGCGAGATACCTGGCAGTGACGACCCAGCACCACGACAACCGCCTGCGCAACGACGAGCACGA
GGCGCTTATGAACGCAGCGATTGAAGGCAACGCTGACGAAGCGTCGAAATTGATCGACGAGCATTACCGCAAGACGCTAA
GTCTGGTTACGCGCAGCTACTAG

Upstream 100 bases:

>100_bases
GGCAATGCGGTAAAGCAAGCGCTTGGCGTTCGGATTTGTGATATGCCGTTGACAGTAGACCGAATTGCAGCGGCGTTCGT
TTAGATAGAAAGAAGGCGAC

Downstream 100 bases:

>100_bases
CGACAGCGGATGTCTTCTCCAAGATAATACAGAATGAAACGCAGTGTAGTGACGTCGACCCGAGGTGGTTTCTTGGGTCT
TCTGCGACTCGAACCTTCGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAQAAEKLTAASAIYAAIKSDLLRGIFPAGSRLSIKDLADRYETSVNPVREALSRLSAERIVDQREQRGFAVPVITDDDL
RELVKTRCWMEDIALRESIANTDETYTLNIITAYHRLAHTQFLGSDGLPNTDWEDRHRMFHLALIANCGSSWLLSFCDHL
MFQATRARYLAVTTQHHDNRLRNDEHEALMNAAIEGNADEASKLIDEHYRKTLSLVTRSY

Sequences:

>Translated_220_residues
MAQAAEKLTAASAIYAAIKSDLLRGIFPAGSRLSIKDLADRYETSVNPVREALSRLSAERIVDQREQRGFAVPVITDDDL
RELVKTRCWMEDIALRESIANTDETYTLNIITAYHRLAHTQFLGSDGLPNTDWEDRHRMFHLALIANCGSSWLLSFCDHL
MFQATRARYLAVTTQHHDNRLRNDEHEALMNAAIEGNADEASKLIDEHYRKTLSLVTRSY
>Mature_219_residues
AQAAEKLTAASAIYAAIKSDLLRGIFPAGSRLSIKDLADRYETSVNPVREALSRLSAERIVDQREQRGFAVPVITDDDLR
ELVKTRCWMEDIALRESIANTDETYTLNIITAYHRLAHTQFLGSDGLPNTDWEDRHRMFHLALIANCGSSWLLSFCDHLM
FQATRARYLAVTTQHHDNRLRNDEHEALMNAAIEGNADEASKLIDEHYRKTLSLVTRSY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=210, Percent_Identity=27.1428571428571, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25006; Mature: 24875

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAAEKLTAASAIYAAIKSDLLRGIFPAGSRLSIKDLADRYETSVNPVREALSRLSAER
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
IVDQREQRGFAVPVITDDDLRELVKTRCWMEDIALRESIANTDETYTLNIITAYHRLAHT
HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHH
QFLGSDGLPNTDWEDRHRMFHLALIANCGSSWLLSFCDHLMFQATRARYLAVTTQHHDNR
HHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCHHHHH
LRNDEHEALMNAAIEGNADEASKLIDEHYRKTLSLVTRSY
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQAAEKLTAASAIYAAIKSDLLRGIFPAGSRLSIKDLADRYETSVNPVREALSRLSAER
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
IVDQREQRGFAVPVITDDDLRELVKTRCWMEDIALRESIANTDETYTLNIITAYHRLAHT
HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHH
QFLGSDGLPNTDWEDRHRMFHLALIANCGSSWLLSFCDHLMFQATRARYLAVTTQHHDNR
HHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCHHHHH
LRNDEHEALMNAAIEGNADEASKLIDEHYRKTLSLVTRSY
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1569021 [H]