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The map label for this gene is yfiO [C]

Identifier: 88657674

GI number: 88657674

Start: 1031483

End: 1032235

Strand: Reverse

Name: yfiO [C]

Synonym: ECH_1005

Alternate gene names: 88657674

Gene position: 1032235-1031483 (Counterclockwise)

Preceding gene: 88658616

Following gene: 88657921

Centisome position: 87.76

GC content: 31.74

Gene sequence:

>753_bases
ATGTGTCACTCTAAAATTATTCGCAAGGCTGTTTACTTGTTATGTTGTTGTTTTTTAATGGTAAACTGCTCTTTCATAAA
GAAGGGAGAAAAATTTGTTGAAGATCGAACAGCAGATGAAATGTATGAGAGTGCCTTAAAGAAATCTAATGCCAAAGAAT
ATAAGAGTGCGGTAAAAGATCTTGAGGAAATAGACAATCTTTACCCATTTTCTCCTGTGGCGATAAAAGCTCGTCTTATG
ATGTCATTTTTGAATTATGAACTTGGCGATTATTCTCGTGCTGAAATTTATGCGGATGATTATATACAACTTTATCCTGA
TAGTAAGGATATAGATTTTGCATATTATTTAAGGATAATGGCGAACTACATGCAAATTAGTGATATAGATCGTGATCAAA
GTAGTGTGCATAAAGTTTTGGAATTGTTGAATGAGTTTATACGTCTCTTTCCCAACTCTATGTATTTAGAAGAAGTTATG
AAAAGATTAGAACTTGTTCATCAACATATTGCTGGTAAGGAATTTTCAATAGGTAAGTTTTATTTGCAACGTGGTGAATA
TGTTGCTGCTATAAAAAGGTTTAGTACAATATTAAATAAGTATAAGGATACGAAATATTATTCAGAAAGCTTATATAGAA
TTGCTGAAGCGTACTTAGCTTTGGGGGATATTGCTGCCTATGCAAGATATATGTCATTACTTAAAGAATGTTGTATTGAT
ACTGGATGGTATAAAGAACCTTTGGTTAAATAA

Upstream 100 bases:

>100_bases
TAGTGTAAGTACATTAGTAAAAATTGCTTGTCTGGGATACATCTTTATGTTTCAATAGGATATTTATATATTTACAAGTT
ATATTTATAGGTGATTGAAT

Downstream 100 bases:

>100_bases
CAAAGAATAGTTTATAATTGTAGTGAGGCTTTATTGATGTTTTGGAATCTCTTAATTAAAAGGGATGTTAAAAACTTGAG
ATAATAATACATATGAATAA

Product: putative competence protein ComL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MCHSKIIRKAVYLLCCCFLMVNCSFIKKGEKFVEDRTADEMYESALKKSNAKEYKSAVKDLEEIDNLYPFSPVAIKARLM
MSFLNYELGDYSRAEIYADDYIQLYPDSKDIDFAYYLRIMANYMQISDIDRDQSSVHKVLELLNEFIRLFPNSMYLEEVM
KRLELVHQHIAGKEFSIGKFYLQRGEYVAAIKRFSTILNKYKDTKYYSESLYRIAEAYLALGDIAAYARYMSLLKECCID
TGWYKEPLVK

Sequences:

>Translated_250_residues
MCHSKIIRKAVYLLCCCFLMVNCSFIKKGEKFVEDRTADEMYESALKKSNAKEYKSAVKDLEEIDNLYPFSPVAIKARLM
MSFLNYELGDYSRAEIYADDYIQLYPDSKDIDFAYYLRIMANYMQISDIDRDQSSVHKVLELLNEFIRLFPNSMYLEEVM
KRLELVHQHIAGKEFSIGKFYLQRGEYVAAIKRFSTILNKYKDTKYYSESLYRIAEAYLALGDIAAYARYMSLLKECCID
TGWYKEPLVK
>Mature_250_residues
MCHSKIIRKAVYLLCCCFLMVNCSFIKKGEKFVEDRTADEMYESALKKSNAKEYKSAVKDLEEIDNLYPFSPVAIKARLM
MSFLNYELGDYSRAEIYADDYIQLYPDSKDIDFAYYLRIMANYMQISDIDRDQSSVHKVLELLNEFIRLFPNSMYLEEVM
KRLELVHQHIAGKEFSIGKFYLQRGEYVAAIKRFSTILNKYKDTKYYSESLYRIAEAYLALGDIAAYARYMSLLKECCID
TGWYKEPLVK

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=217, Percent_Identity=26.7281105990783, Blast_Score=106, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29419; Mature: 29419

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCHSKIIRKAVYLLCCCFLMVNCSFIKKGEKFVEDRTADEMYESALKKSNAKEYKSAVKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHH
LEEIDNLYPFSPVAIKARLMMSFLNYELGDYSRAEIYADDYIQLYPDSKDIDFAYYLRIM
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHEECCCCEEECCCCCCCHHHHHHHHH
ANYMQISDIDRDQSSVHKVLELLNEFIRLFPNSMYLEEVMKRLELVHQHIAGKEFSIGKF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
YLQRGEYVAAIKRFSTILNKYKDTKYYSESLYRIAEAYLALGDIAAYARYMSLLKECCID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TGWYKEPLVK
CCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]