Click here to switch to the map view.

The map label for this gene is 88606732

Identifier: 88606732

GI number: 88606732

Start: 1025792

End: 1026289

Strand: Reverse

Name: 88606732

Synonym: APH_0964

Alternate gene names: NA

Gene position: 1026289-1025792 (Counterclockwise)

Preceding gene: 88607450

Following gene: 88607385

Centisome position: 69.75

GC content: 54.22

Gene sequence:

>498_bases
GTGACCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTC
TGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCT
CTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTC
TCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCT
CTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTC
TCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGTCTCTCTGGT
AGTCTAAAGATATTTTAA

Upstream 100 bases:

>100_bases
TGTGCAGGTTTAGAGGCAAGTCTATGCCTGTTGTATCATAAGTTGGCGATTATCTTTCAATTCGATAATTTTTCTTGAAT
CTGTTGTAGGGAGGGGGTAT

Downstream 100 bases:

>100_bases
GTTGTAGAGATCACATAGATCTATGAATTGCTAGTGTTATATTAGTTACATGTTCATGAGAAGTTTTAGGGCCCCTGAGT
TTTAGTATGCGCACAATGAT

Product: triple helix repeat-containing collagen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MTSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGL
SGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSG
SLKIF

Sequences:

>Translated_165_residues
MTSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGL
SGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSG
SLKIF
>Mature_164_residues
TSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLS
GLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGS
LKIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI115392133, Length=161, Percent_Identity=40.3726708074534, Blast_Score=102, Evalue=1e-22,
Organism=Homo sapiens, GI73486664, Length=173, Percent_Identity=35.8381502890173, Blast_Score=98, Evalue=3e-21,
Organism=Homo sapiens, GI148536823, Length=174, Percent_Identity=41.9540229885057, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI16357503, Length=174, Percent_Identity=41.9540229885057, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI73486666, Length=173, Percent_Identity=35.8381502890173, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI32140760, Length=172, Percent_Identity=36.6279069767442, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI111118974, Length=189, Percent_Identity=32.8042328042328, Blast_Score=88, Evalue=3e-18,
Organism=Homo sapiens, GI111118976, Length=189, Percent_Identity=32.8042328042328, Blast_Score=87, Evalue=5e-18,
Organism=Homo sapiens, GI5803080, Length=160, Percent_Identity=38.125, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI111118968, Length=184, Percent_Identity=33.695652173913, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI111118970, Length=184, Percent_Identity=33.695652173913, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI111118972, Length=184, Percent_Identity=33.695652173913, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI48762934, Length=209, Percent_Identity=30.1435406698565, Blast_Score=84, Evalue=6e-17,
Organism=Homo sapiens, GI116256354, Length=170, Percent_Identity=35.8823529411765, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI89363017, Length=157, Percent_Identity=36.3057324840764, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI148536825, Length=160, Percent_Identity=37.5, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI100913220, Length=181, Percent_Identity=32.5966850828729, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI18780273, Length=196, Percent_Identity=32.6530612244898, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI89142730, Length=96, Percent_Identity=44.7916666666667, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI4502961, Length=164, Percent_Identity=35.9756097560976, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI119508426, Length=224, Percent_Identity=29.0178571428571, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI110349772, Length=185, Percent_Identity=31.3513513513514, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17568911, Length=161, Percent_Identity=44.0993788819876, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17568913, Length=161, Percent_Identity=44.0993788819876, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71988208, Length=166, Percent_Identity=38.5542168674699, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71988210, Length=166, Percent_Identity=38.5542168674699, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17506917, Length=132, Percent_Identity=35.6060606060606, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI25153132, Length=174, Percent_Identity=33.9080459770115, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17540820, Length=174, Percent_Identity=30.4597701149425, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24581820, Length=161, Percent_Identity=42.8571428571429, Blast_Score=105, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24581822, Length=161, Percent_Identity=42.8571428571429, Blast_Score=105, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24581824, Length=161, Percent_Identity=42.8571428571429, Blast_Score=105, Evalue=9e-24,
Organism=Drosophila melanogaster, GI17137252, Length=153, Percent_Identity=38.562091503268, Blast_Score=90, Evalue=8e-19,
Organism=Drosophila melanogaster, GI45549584, Length=124, Percent_Identity=38.7096774193548, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14363; Mature: 14231

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGSLKIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure 
TSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGLSGSLKIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA