Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200911
Identifier: 87200911
GI number: 87200911
Start: 3118118
End: 3118897
Strand: Direct
Name: 87200911
Synonym: Saro_2899
Alternate gene names: NA
Gene position: 3118118-3118897 (Clockwise)
Preceding gene: 87200910
Following gene: 87200920
Centisome position: 87.55
GC content: 69.62
Gene sequence:
>780_bases ATGAAGGCGAGCCTCGGATCGGCGCTGATCGCATTGGCGGGCGCACTTGCGTCGGCAGGGTGCGACACTGCGCCCGATCC GCAAGCGTCCTCGTCCGCCGAAACCGCGAGCCCCCCCGCGCCCGAGGTATCCGCCACCGCCAGCGAGGCTTTCGTCGCCG AGGCGGAAGCATCGGCCGATGCCGCCGCAGAGGCCAGCCCTGCCGCGCCGAGCGTCGTCACCTATGCACCGAAGGACGAA TGCGCCGGAAGGGCTGGCTGGACCGATTTCCGCAAGGCGCTGGGGAACGCGGTCTCCGCACGCGATGCCCGTGCCTTCGC CGCTCTCGCCTCCAGCGATGTCGCGCTCGACTATGGCGGCGGGAGCGGGACGGATGAACTGGTCAAGCGGCTTTCCGACC CCGCGTCCGGGCTGTGGCAGGAACTCGACGCGATCCTGCCGCTGGGCTGCGCGGTTCAGGGCGGGCTGGCCGCCATGCCG TGGATCTTCTGGAACGTACCGGAAAACACCGAAAGCTATGAAACGATGCTGGTGCTGGGCCAGGACACGGCATTGCGCGA CCGGCCGGGCGGCAAGGCCCTGGCTCCGGCGGGCTGGCGCCTCGCGTCGATCGATACGAGACGCTTCGATCCCAAGGCGC GCGCTGCGCGGGTGACGCTGGAAGATGGCGCGAAGGGCTGGATAGAGACTGCGAAGCTGCGCAGCCTTCTCGACTATCGG CTGATCGCGGAGCCGCGCGACGGCGGCTGGCGCATCACCGCCTTCATCGCCGGGGACTAG
Upstream 100 bases:
>100_bases TTGAAGAAGTGCCGCTTGTCGAATCCGCGCCCCGTTATGCCGATGCGGAACCGGCGGCGATTGCCGCGGTTCCGGACGAT GAAGGGACGATAGCAGCGGA
Downstream 100 bases:
>100_bases GCGGCTTATTCCGCCTTGAGTTGGAGATCGAGCGCGTGGCCGCCCGACGTCAGCCGCATCGAACGGCCCCTGCGCGAAAT CTCGGGAGCCGCCGAAAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MKASLGSALIALAGALASAGCDTAPDPQASSSAETASPPAPEVSATASEAFVAEAEASADAAAEASPAAPSVVTYAPKDE CAGRAGWTDFRKALGNAVSARDARAFAALASSDVALDYGGGSGTDELVKRLSDPASGLWQELDAILPLGCAVQGGLAAMP WIFWNVPENTESYETMLVLGQDTALRDRPGGKALAPAGWRLASIDTRRFDPKARAARVTLEDGAKGWIETAKLRSLLDYR LIAEPRDGGWRITAFIAGD
Sequences:
>Translated_259_residues MKASLGSALIALAGALASAGCDTAPDPQASSSAETASPPAPEVSATASEAFVAEAEASADAAAEASPAAPSVVTYAPKDE CAGRAGWTDFRKALGNAVSARDARAFAALASSDVALDYGGGSGTDELVKRLSDPASGLWQELDAILPLGCAVQGGLAAMP WIFWNVPENTESYETMLVLGQDTALRDRPGGKALAPAGWRLASIDTRRFDPKARAARVTLEDGAKGWIETAKLRSLLDYR LIAEPRDGGWRITAFIAGD >Mature_259_residues MKASLGSALIALAGALASAGCDTAPDPQASSSAETASPPAPEVSATASEAFVAEAEASADAAAEASPAAPSVVTYAPKDE CAGRAGWTDFRKALGNAVSARDARAFAALASSDVALDYGGGSGTDELVKRLSDPASGLWQELDAILPLGCAVQGGLAAMP WIFWNVPENTESYETMLVLGQDTALRDRPGGKALAPAGWRLASIDTRRFDPKARAARVTLEDGAKGWIETAKLRSLLDYR LIAEPRDGGWRITAFIAGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26693; Mature: 26693
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKASLGSALIALAGALASAGCDTAPDPQASSSAETASPPAPEVSATASEAFVAEAEASAD CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC AAAEASPAAPSVVTYAPKDECAGRAGWTDFRKALGNAVSARDARAFAALASSDVALDYGG HHCCCCCCCCCEEEECCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCC GSGTDELVKRLSDPASGLWQELDAILPLGCAVQGGLAAMPWIFWNVPENTESYETMLVLG CCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCCHHCCEEEEECCCCCCCEEEEEEEC QDTALRDRPGGKALAPAGWRLASIDTRRFDPKARAARVTLEDGAKGWIETAKLRSLLDYR CCCCCCCCCCCCEECCCCCEEEECCCCCCCCCHHEEEEECCCCCCHHHHHHHHHHHHHHH LIAEPRDGGWRITAFIAGD HEECCCCCCEEEEEEEECC >Mature Secondary Structure MKASLGSALIALAGALASAGCDTAPDPQASSSAETASPPAPEVSATASEAFVAEAEASAD CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC AAAEASPAAPSVVTYAPKDECAGRAGWTDFRKALGNAVSARDARAFAALASSDVALDYGG HHCCCCCCCCCEEEECCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCC GSGTDELVKRLSDPASGLWQELDAILPLGCAVQGGLAAMPWIFWNVPENTESYETMLVLG CCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCCHHCCEEEEECCCCCCCEEEEEEEC QDTALRDRPGGKALAPAGWRLASIDTRRFDPKARAARVTLEDGAKGWIETAKLRSLLDYR CCCCCCCCCCCCEECCCCCEEEECCCCCCCCCHHEEEEECCCCCCHHHHHHHHHHHHHHH LIAEPRDGGWRITAFIAGD HEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA