Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200894
Identifier: 87200894
GI number: 87200894
Start: 3104429
End: 3104881
Strand: Direct
Name: 87200894
Synonym: Saro_2881
Alternate gene names: NA
Gene position: 3104429-3104881 (Clockwise)
Preceding gene: 87200893
Following gene: 87200895
Centisome position: 87.16
GC content: 62.47
Gene sequence:
>453_bases ATGCGCCTTGTTGCCGCCGCGATTGCCTTTGCGCTGACTTCCACCGCCGTCCAGGCCGAGGAATGCAAGCTGACCCCCAA GCAGGTCGTCAGCCAGTTCATGGACGAGTTCTACATCCAGAAGAAGGTACGCTCTTCCTTCGAGAAGTGGGTCGATCCCG GCTACATCCAGCACAACCCATATGCCGCCACCGGCCGCGACGCGGCGATCACGTTTCTCGAGAAGTTCGTGGCGGACAAT CCGGGCCAGAAGACCACGATCCACCGCGTGATCGCCGACGGCAACCTCGTCGCCGTGCACAGCCATGGCTGGAACGAGAA CGGCGATGCGGCGGCGAAGCGTGGTTTCGCGGTAATCGACATCTTCCGCGTCGAGGGCTGCCGGGTGATGGAGCACTGGG ACGTGCTGTCGCCGGTGCCCGAAGCCTCCGCCAATTCCAACACGATGTTCTGA
Upstream 100 bases:
>100_bases CGCGTCGAAGGCGGGATGATCGTCGAACACTGGGACGTGATCCAGGATGTGCCGGCCAATCCGGTCAACCCGAACAGCAT GTTTTGAAGGGAGAACAACG
Downstream 100 bases:
>100_bases GGACGCCATGCGATTTCGCGACAGGTGCGTGGCGATCCTCGGCGGGAATGCGGGGATCGGCCTGGCGGCGGCGCGCCTGT TCGCCGCCGAGGGTGCGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 150; Mature: 150
Protein sequence:
>150_residues MRLVAAAIAFALTSTAVQAEECKLTPKQVVSQFMDEFYIQKKVRSSFEKWVDPGYIQHNPYAATGRDAAITFLEKFVADN PGQKTTIHRVIADGNLVAVHSHGWNENGDAAAKRGFAVIDIFRVEGCRVMEHWDVLSPVPEASANSNTMF
Sequences:
>Translated_150_residues MRLVAAAIAFALTSTAVQAEECKLTPKQVVSQFMDEFYIQKKVRSSFEKWVDPGYIQHNPYAATGRDAAITFLEKFVADN PGQKTTIHRVIADGNLVAVHSHGWNENGDAAAKRGFAVIDIFRVEGCRVMEHWDVLSPVPEASANSNTMF >Mature_150_residues MRLVAAAIAFALTSTAVQAEECKLTPKQVVSQFMDEFYIQKKVRSSFEKWVDPGYIQHNPYAATGRDAAITFLEKFVADN PGQKTTIHRVIADGNLVAVHSHGWNENGDAAAKRGFAVIDIFRVEGCRVMEHWDVLSPVPEASANSNTMF
Specific function: Unknown
COG id: COG4922
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16614; Mature: 16614
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLVAAAIAFALTSTAVQAEECKLTPKQVVSQFMDEFYIQKKVRSSFEKWVDPGYIQHNP CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC YAATGRDAAITFLEKFVADNPGQKTTIHRVIADGNLVAVHSHGWNENGDAAAKRGFAVID CCCCCCHHHHHHHHHHHCCCCCCCHHHHEEEECCCEEEEECCCCCCCCCHHHHCCEEEEE IFRVEGCRVMEHWDVLSPVPEASANSNTMF EEECCCCHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MRLVAAAIAFALTSTAVQAEECKLTPKQVVSQFMDEFYIQKKVRSSFEKWVDPGYIQHNP CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC YAATGRDAAITFLEKFVADNPGQKTTIHRVIADGNLVAVHSHGWNENGDAAAKRGFAVID CCCCCCHHHHHHHHHHHCCCCCCCHHHHEEEECCCEEEEECCCCCCCCCHHHHCCEEEEE IFRVEGCRVMEHWDVLSPVPEASANSNTMF EEECCCCHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA