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The map label for this gene is allR [H]

Identifier: 87200420

GI number: 87200420

Start: 2575480

End: 2576235

Strand: Reverse

Name: allR [H]

Synonym: Saro_2407

Alternate gene names: 87200420

Gene position: 2576235-2575480 (Counterclockwise)

Preceding gene: 87200421

Following gene: 87200419

Centisome position: 72.33

GC content: 70.37

Gene sequence:

>756_bases
GTGAACGCCTCAGCCGCCTCCAACCCGGTCAAGTCCGCGATGCGCACGCTCGACGTGATCGAGTACGTTGTCGCGAACCG
GCAGGGCGCCGTGGCGCAGGAGATCGCGGGTGCGCTGGCCATTCCGGTCAGCAGCCTGTCCTACCTGCTCGCCACGCTGA
CCGAGCGGGGATACCTGACCCGCGAAGGGCGGCGCTATCTTCCGGGGCCGGGGCTCCAGCGCCTGCGCGCGCCCGAGGCG
GCCCTGACGCTGGAGGACCGCGTGGCGCCGCTGGTGCGGGCGCTGCGCAGCGAGTTGAACGAAACCTCCTCGTTCATGGT
CCGCCGTGGCTGGGAAGTCGAGGCGCTGGTCACCGAGGCGAGCGACCACGCGCTGCGCTATGCGGTCGATCCTGGGACGC
GCCGTCCGCTTCATGCGCTGGCTGCGGGCAAGCTCATGCTGGCATGGATGCCGCCGCAGGAACTGGCGCGCTACTTTGCG
GAGACGGACCGCGCGGTGCTGACGCCCAATACGCGAACCTCGGAGCGCGACCTTCGCGCCGATTTCGCCCGGATCATGGC
GCGCGGCATCAGCATCGCCCGCGAGGAGGCGACCGTCGGCATCTGCGGAATGGCGGCGCCGGTCTGGCTGGACGGGCAAC
TGGCCGGCGCGCTTAGCGTCGCCGTGCCGGCGGTTCGCTTCGGTCCGGACATCGAAGCGCGCATTCTCGTTCTGTTGCAG
CGCACCGCCGCCGCCATCCAGGGAGGTCAACCATGA

Upstream 100 bases:

>100_bases
CCAGCGAGGGCGCGCCGCTCGTGGGCTCGTTCCACGACCGTTTCTGCCTGACCCCGGATGGCTGGCGTTTTGCCGAGCGG
CGCGGAAGCCTGATCTTCAA

Downstream 100 bases:

>100_bases
AGCGACGCACATTTCTCGGCCTCCTTCCCGCGGCGGCGGGCGCCTGCGTGCTGCCGGCCCATGCCTTTGCGGCGAGCGAC
CAGCACCGTTGCCGCGTGAT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: Negative regulator of allantoin and glyoxylate utilization operons [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MNASAASNPVKSAMRTLDVIEYVVANRQGAVAQEIAGALAIPVSSLSYLLATLTERGYLTREGRRYLPGPGLQRLRAPEA
ALTLEDRVAPLVRALRSELNETSSFMVRRGWEVEALVTEASDHALRYAVDPGTRRPLHALAAGKLMLAWMPPQELARYFA
ETDRAVLTPNTRTSERDLRADFARIMARGISIAREEATVGICGMAAPVWLDGQLAGALSVAVPAVRFGPDIEARILVLLQ
RTAAAIQGGQP

Sequences:

>Translated_251_residues
MNASAASNPVKSAMRTLDVIEYVVANRQGAVAQEIAGALAIPVSSLSYLLATLTERGYLTREGRRYLPGPGLQRLRAPEA
ALTLEDRVAPLVRALRSELNETSSFMVRRGWEVEALVTEASDHALRYAVDPGTRRPLHALAAGKLMLAWMPPQELARYFA
ETDRAVLTPNTRTSERDLRADFARIMARGISIAREEATVGICGMAAPVWLDGQLAGALSVAVPAVRFGPDIEARILVLLQ
RTAAAIQGGQP
>Mature_251_residues
MNASAASNPVKSAMRTLDVIEYVVANRQGAVAQEIAGALAIPVSSLSYLLATLTERGYLTREGRRYLPGPGLQRLRAPEA
ALTLEDRVAPLVRALRSELNETSSFMVRRGWEVEALVTEASDHALRYAVDPGTRRPLHALAAGKLMLAWMPPQELARYFA
ETDRAVLTPNTRTSERDLRADFARIMARGISIAREEATVGICGMAAPVWLDGQLAGALSVAVPAVRFGPDIEARILVLLQ
RTAAAIQGGQP

Specific function: Negative regulator of allantoin and glyoxylate utilization operons. Binds to the gcl promoter and to the allS- allA intergenic region [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI87082359, Length=232, Percent_Identity=26.2931034482759, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786715, Length=220, Percent_Identity=24.0909090909091, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27110; Mature: 27110

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASAASNPVKSAMRTLDVIEYVVANRQGAVAQEIAGALAIPVSSLSYLLATLTERGYLT
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
REGRRYLPGPGLQRLRAPEAALTLEDRVAPLVRALRSELNETSSFMVRRGWEVEALVTEA
CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
SDHALRYAVDPGTRRPLHALAAGKLMLAWMPPQELARYFAETDRAVLTPNTRTSERDLRA
CCCEEEEEECCCCCCHHHHHHHCCEEEEECCHHHHHHHHHHCCCEEECCCCCCCHHHHHH
DFARIMARGISIAREEATVGICGMAAPVWLDGQLAGALSVAVPAVRFGPDIEARILVLLQ
HHHHHHHHHHHHHHHHCCEEEECCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RTAAAIQGGQP
HHHHHHCCCCC
>Mature Secondary Structure
MNASAASNPVKSAMRTLDVIEYVVANRQGAVAQEIAGALAIPVSSLSYLLATLTERGYLT
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
REGRRYLPGPGLQRLRAPEAALTLEDRVAPLVRALRSELNETSSFMVRRGWEVEALVTEA
CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
SDHALRYAVDPGTRRPLHALAAGKLMLAWMPPQELARYFAETDRAVLTPNTRTSERDLRA
CCCEEEEEECCCCCCHHHHHHHCCEEEEECCHHHHHHHHHHCCCEEECCCCCCCHHHHHH
DFARIMARGISIAREEATVGICGMAAPVWLDGQLAGALSVAVPAVRFGPDIEARILVLLQ
HHHHHHHHHHHHHHHHCCEEEECCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RTAAAIQGGQP
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA